arefeen / DeepPASTALinks
☆10Updated 5 years ago
Alternatives and similar repositories for DeepPASTA
Users that are interested in DeepPASTA are comparing it to the libraries listed below
Sorting:
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Updated 6 years ago
- ☆33Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆32Updated 3 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- ☆38Updated last year
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- ☆31Updated 6 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆28Updated 8 years ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- ☆19Updated 5 years ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Updated 6 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆43Updated 2 years ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- Python package to plot sequence logos☆29Updated 2 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Updated 8 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- ☆17Updated 7 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆31Updated 4 months ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆66Updated 4 years ago
- ☆24Updated last year
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Updated 7 years ago