DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding
☆13Nov 29, 2018Updated 7 years ago
Alternatives and similar repositories for dlprb
Users that are interested in dlprb are comparing it to the libraries listed below
Sorting:
- inferring RBP binding sites and motifs using local and global CNNs☆19Sep 29, 2019Updated 6 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 4 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Oct 7, 2020Updated 5 years ago
- deep multi-instance learning for rna protein binding prediction☆10May 21, 2017Updated 8 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Dec 9, 2021Updated 4 years ago
- ☆23May 16, 2020Updated 5 years ago
- ☆12Jan 5, 2023Updated 3 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Jul 19, 2018Updated 7 years ago
- Convolution implementation with on the fly Toeplitz matrix generation.☆12Dec 17, 2016Updated 9 years ago
- inferring sequence-structure motifs using deep learning☆40Aug 3, 2023Updated 2 years ago
- For training very deep networks☆10Jun 12, 2017Updated 8 years ago
- icSHAPE pipeline☆31Oct 1, 2015Updated 10 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Jul 20, 2021Updated 4 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilities☆13Dec 12, 2024Updated last year
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- ☆11Dec 18, 2024Updated last year
- Find CpG islands in genome☆11Mar 27, 2020Updated 5 years ago
- Exploring Isoform-specific interactions☆12Sep 16, 2025Updated 6 months ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics☆14Jan 14, 2022Updated 4 years ago
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆139Dec 15, 2022Updated 3 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆13Jan 9, 2026Updated 2 months ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆14Mar 9, 2026Updated last week
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Aug 26, 2021Updated 4 years ago
- 阅读打卡活动☆22Jan 28, 2025Updated last year
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- Leveraging Local and Global Patterns for Self-Attention Networks☆12Jun 3, 2019Updated 6 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆12Dec 2, 2024Updated last year
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆16Mar 1, 2022Updated 4 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago