ilanbb / dlprb
DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding
☆13Updated 6 years ago
Alternatives and similar repositories for dlprb:
Users that are interested in dlprb are comparing it to the libraries listed below
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆32Updated 5 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 2 years ago
- ☆18Updated 11 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆22Updated 2 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 6 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- ☆14Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆11Updated 4 years ago
- MHC Class I and Class II neoantigen binding prediction☆28Updated last year
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆12Updated 6 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆25Updated 7 years ago
- Kdrew's scripts for handling protein complex map data☆14Updated last year
- Data and analysis for the Splatter paper☆28Updated 7 years ago
- MVP (Qi et al 2021) source code☆15Updated 3 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- Knowledge-primed neural networks☆35Updated last year
- ☆26Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated 3 weeks ago
- Code for reproducing the Sei manuscript results☆16Updated 3 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 6 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆41Updated last year
- ☆19Updated 4 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated last year
- Deep learning for modeling gene regulatory network☆22Updated 3 years ago
- inferring sequence-structure motifs using deep learning☆37Updated last year