Peak calling tool for CLIP-seq data
☆14Apr 7, 2021Updated 5 years ago
Alternatives and similar repositories for PEAKachu
Users that are interested in PEAKachu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jul 6, 2026Updated last month
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 5 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 5 years ago
- StructureFold2☆12Jun 25, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- A tool to identify CLIP-seq peaks☆73Oct 31, 2025Updated 10 months ago
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated 2 years ago
- Single-Cell Omics Preparation Entity Tools☆14Mar 23, 2021Updated 5 years ago
- ☆18Jan 17, 2019Updated 7 years ago
- A bash/biobash library for workflow and pipeline design☆10Jul 2, 2025Updated last year
- ☆11Sep 17, 2020Updated 5 years ago
- Tool comparison for detecting differentially expressed individual transposable elements☆12Jan 7, 2022Updated 4 years ago
- ☆15May 31, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆14Jul 3, 2012Updated 14 years ago
- Supplementary files for our Aneuploidy Detection paper☆10Jul 5, 2018Updated 8 years ago
- General Use Scripts and Helper functions☆15Mar 29, 2018Updated 8 years ago
- fast webservices based query tool for large sets of genomic features☆26May 10, 2025Updated last year
- JAMM Peak Finder for Sequencing Datasets☆30Mar 12, 2020Updated 6 years ago
- Inspired from the paper "Show Attend and Tell". This project's aim was to train a neural network which can provide descriptive text for a…☆14Feb 7, 2021Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37May 18, 2022Updated 4 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated last year
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Shiny-based framework to analyze and visualize interactively genomic data