tbischler / PEAKachuLinks
Peak calling tool for CLIP-seq data
☆14Updated 4 years ago
Alternatives and similar repositories for PEAKachu
Users that are interested in PEAKachu are comparing it to the libraries listed below
Sorting:
- Clonality inference in multiple tumor samples using phylogeny☆13Updated 8 years ago
- Genomic Association Tester☆35Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- BigWig and BAM utilities☆99Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 7 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- ☆39Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆38Updated 2 years ago
- ☆34Updated last month
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated last week
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 3 years ago
- A tool for timing complex copy number gains in cancer.☆19Updated 3 weeks ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Ultraperformant reimplementation of SICER☆58Updated 3 weeks ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago