vrmelo / SPLICE-qLinks
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
☆12Updated 2 years ago
Alternatives and similar repositories for SPLICE-q
Users that are interested in SPLICE-q are comparing it to the libraries listed below
Sorting:
- ☆15Updated 3 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 8 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 2 weeks ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- ☆39Updated 3 months ago
- A guide to running MaxQuant in Linux☆34Updated 5 years ago
- simplified cellranger for long-read data☆19Updated last month
- ☆49Updated 3 years ago
- Multi-Omics Peptide Generator☆27Updated this week
- A network-based approach for exon set enrichment☆15Updated 2 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 5 months ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Builds a PEP from SRA or GEO accessions☆53Updated 2 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- splicing and feature maps for RBPs☆25Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 5 years ago
- Analysis pipeline for the GUIDE-seq assay.☆27Updated 2 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆49Updated 2 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆78Updated 2 weeks ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆28Updated 11 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- BAGEL software☆28Updated last year
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Integration ribosome profiling - mass spectrometry☆15Updated last week