Alternatives and similar repositories for SPLICE-q

Users that are interested in SPLICE-q are comparing it to the libraries listed below

• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 5 months ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆27Updated last year
• gagneurlab / absplice
  ☆39Updated 2 weeks ago
• AngelCampos / txtools
  An R package to process and analyze transcriptomic data
  ☆17Updated last month
• andrewrech / antigen.garnish
  ☆48Updated 3 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• ribosomeprofiling / riboflow
  Pipeline for Ribosome Profiling Data
  ☆16Updated 2 years ago
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆33Updated 5 years ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated 2 years ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last month
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated last year
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆26Updated 2 months ago
• ShixiangWang / sigflow
  Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
  ☆27Updated 9 months ago
• gxiaolab / mountainClimber
  ☆20Updated 5 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated 3 months ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆53Updated 4 months ago
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆34Updated last week
• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆32Updated 4 years ago
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆15Updated 2 weeks ago
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 6 years ago
• BioinfoUNIBA / QEdit
  RNA editing quantification in deep transcriptome data
  ☆15Updated 2 years ago
• gatk-workflows / gatk4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
  ☆77Updated 3 years ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆52Updated last week
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆34Updated 2 years ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆27Updated last year
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆54Updated last month
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆43Updated 8 months ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago