vrmelo / SPLICE-q
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
☆12Updated last year
Alternatives and similar repositories for SPLICE-q:
Users that are interested in SPLICE-q are comparing it to the libraries listed below
- ☆15Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated 2 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated last year
- ☆47Updated 2 years ago
- An R package to process and analyze transcriptomic data☆17Updated 7 months ago
- Comprehensive and scalable differential splicing analyses☆17Updated last month
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆15Updated this week
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated 11 months ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆17Updated 2 weeks ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated last week
- A guide to running MaxQuant in Linux☆32Updated 5 years ago
- ☆38Updated 7 months ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆27Updated 6 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆18Updated 3 months ago
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated 3 weeks ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- Motif manipulation functions for R.☆28Updated this week
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆25Updated 3 years ago
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆23Updated 8 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Nascent Transcription Processing Pipeline☆19Updated this week
- ☆15Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆25Updated 11 months ago
- Analysis pipeline for the GUIDE-seq assay.☆24Updated 2 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- HOT regions paper☆11Updated 5 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated 10 months ago