SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
☆11Sep 15, 2023Updated 2 years ago
Alternatives and similar repositories for SPLICE-q
Users that are interested in SPLICE-q are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- ☆15Aug 25, 2022Updated 3 years ago
- ☆15Sep 20, 2022Updated 3 years ago
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆24Jan 15, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Piranha is a peak-caller for CLIP- and RIP-seq data☆20Feb 7, 2018Updated 8 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 5 months ago
- Randomize Git commit timestamps to enhance privacy☆14Jun 2, 2026Updated 2 weeks ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆20Nov 22, 2022Updated 3 years ago
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 9 months ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- Bioinformatics projects and code shared by Zhi John Lu☆10Jun 3, 2021Updated 5 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44May 11, 2017Updated 9 years ago
- Mapping of GENCODE gene annotation set files to older assembies☆14Apr 16, 2026Updated 2 months ago
- Stupid Simple Elastic Compute Cloud☆16Dec 7, 2023Updated 2 years ago
- ✂️ Trim sequencing adapters from NGS data automatically☆14Sep 5, 2025Updated 9 months ago
- PyMOL Plugin for displaying polar contacts☆20Mar 11, 2019Updated 7 years ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 10 months ago
- Python-based framework for computational immunomics☆15Jun 11, 2026Updated last week
- RNA editing tests☆17Sep 24, 2020Updated 5 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆17Dec 10, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 4 months ago
- exRNA Biomarker Discovery for Liquid Biopsy☆11Oct 29, 2020Updated 5 years ago
- This is a repository of the scLinaX R package developed in the Tomofuji et al (Quantification of escape from X chromosome inactivation wi…☆11Sep 12, 2025Updated 9 months ago
- A tool to create a directory from a recipe☆17Nov 17, 2024Updated last year
- Workflow for analyzing MNase-seq data to generate nucleosome occupancy plots☆12Dec 1, 2022Updated 3 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- Web browser based editor for drawing HELM macromolecules.☆24Jun 21, 2024Updated last year
- icSHAPE pipeline☆31Oct 1, 2015Updated 10 years ago
- ggplot2 geoms to outline groups of data points☆16Nov 24, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 2 months ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- MNase-seq analysis pipeline using BWA and DANPOS2.☆13Feb 23, 2026Updated 3 months ago
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- Exploring Isoform-specific interactions☆13Sep 16, 2025Updated 9 months ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago