vrmelo / SPLICE-q
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
☆11Updated last year
Alternatives and similar repositories for SPLICE-q:
Users that are interested in SPLICE-q are comparing it to the libraries listed below
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated last month
- ☆15Updated 2 years ago
- A guide to running MaxQuant in Linux☆32Updated 5 years ago
- ☆47Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆34Updated this week
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- An R package to process and analyze transcriptomic data☆16Updated 5 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆23Updated 10 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated 9 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated 9 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆18Updated 2 years ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆21Updated 4 months ago
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆22Updated 6 months ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆16Updated 2 weeks ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆26Updated 6 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated 2 months ago
- Ultra-fast 5' and 3' demultiplexer☆26Updated 10 months ago
- DRUGZ software☆23Updated 3 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆51Updated last month
- ☆34Updated 5 months ago
- ☆15Updated 7 months ago
- PRedictor of IMmunogenic Epitopes☆17Updated 9 months ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆14Updated 2 years ago
- Inference of TCR motifs☆29Updated last month
- Comprehensive and scalable differential splicing analyses☆15Updated last week
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆18Updated last year
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year