Alternatives and similar repositories for bam2wig

Users that are interested in bam2wig are comparing it to the libraries listed below

• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 7 years ago
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆30Updated 4 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆40Updated 2 years ago
• Jfortin1 / TCGA_AB_Compartments
  A/B compartments for 12 cancer types estimated from TCGA methylation data
  ☆20Updated 9 years ago
• lh3 / lianti
  Tools to process LIANTI sequence data
  ☆23Updated 6 years ago
• bjpop / methpat
  A program for summarising CpG methylation patterns
  ☆20Updated 9 years ago
• bcbio / bcbio_validations
  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
  ☆31Updated 3 years ago
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 6 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago
• shengqh / ngsperl
  NGS perl modules
  ☆11Updated last week
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 10 years ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆23Updated 10 years ago
• DKFZ-ODCF / ACEseqWorkflow
  Allele-specific copy number estimation with whole genome sequencing
  ☆23Updated 2 years ago
• 10XGenomics / longranger
  10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling
  ☆33Updated 5 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• ding-lab / BreakPointSurveyor
  A comprehensive pipeline to analyze and visualize structural variants
  ☆20Updated 6 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• yuchaojiang / CODEX2
  Full-spectrum copy number variation detection by high-throughput DNA sequencing
  ☆40Updated 4 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 6 years ago
• IrinaVKuznetsova / CirGO
  ☆21Updated last year
• QingliGuo / FFPEsig
  Codes and Data for FFPEsig manuscript
  ☆17Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆23Updated 6 months ago
• riverlee / MitoSeek
  Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing
  ☆41Updated 7 years ago
• hoffmangroup / umap
  ☆30Updated 7 months ago
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆41Updated 4 years ago
• zd1 / telseq
  A software for calculating telomere length
  ☆73Updated 7 years ago
• gatk-workflows / gatk4-mitochondria-pipeline
  This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…
  ☆22Updated 5 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• WGLab / SeqMule
  Automated human exome/genome variants detection from FASTQ files
  ☆23Updated 4 years ago