philippdre / omniCLIPLinks
omniCLIP is a CLIP-Seq peak caller
☆16Updated 4 years ago
Alternatives and similar repositories for omniCLIP
Users that are interested in omniCLIP are comparing it to the libraries listed below
Sorting:
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆38Updated last week
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆22Updated last month
- Full-length transcriptome splicing and mutation analysis☆83Updated last year
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 7 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆42Updated last week
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆75Updated last month
- R package containing useful functions for mutational signature analysis☆82Updated last week
- An R interface to the MEME Suite☆50Updated last month
- Lightweight Iterative Gene set Enrichment in R☆57Updated 9 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated 2 months ago
- Cellsnake tool main repo☆33Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- ☆35Updated 6 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- ☆15Updated 2 years ago
- A rust framework to make using alevin-fry even simpler☆54Updated 2 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated 11 months ago
- FRASER - Find RAre Splicing Events in RNA-seq☆46Updated 2 weeks ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated last week
- Fuji plot—a circos representation of multiple GWAS results—☆89Updated last month
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆52Updated 4 years ago
- 🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips☆73Updated 6 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Time-Course Multi-Omics data integration☆25Updated last year