philippdre / omniCLIPLinks
omniCLIP is a CLIP-Seq peak caller
☆16Updated 5 years ago
Alternatives and similar repositories for omniCLIP
Users that are interested in omniCLIP are comparing it to the libraries listed below
Sorting:
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆51Updated 2 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- An R interface to the MEME Suite☆54Updated last month
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- ☆34Updated 2 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- Motif manipulation functions for R.☆30Updated 4 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- Estimation of Promoter Activity from RNA-Seq data☆57Updated 6 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Updated 5 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Piranha is a peak-caller for CLIP- and RIP-seq data☆20Updated 8 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- HiC for copy Number variation and Translocation detection☆41Updated 4 years ago
- ☆42Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- ☆20Updated 6 years ago
- ☆39Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆75Updated 3 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆97Updated last week
- Genomic Association Tester☆35Updated 2 years ago
- An R package to process and analyze transcriptomic data☆19Updated 7 months ago