CLIP Tool Kit (CTK)
☆22Apr 28, 2024Updated 2 years ago
Alternatives and similar repositories for ctk
Users that are interested in ctk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Short course using RStudio for biological data analysis☆14Jul 7, 2022Updated 4 years ago
- Read HOMER motif analysis output in R.☆18Mar 1, 2018Updated 8 years ago
- "Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus R…☆13Jan 7, 2018Updated 8 years ago
- A Perl/R pipeline for plotting metagenes☆40Mar 21, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 5 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆25Jul 28, 2026Updated last month
- General Use Scripts and Helper functions☆15Mar 29, 2018Updated 8 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- A tool to identify CLIP-seq peaks☆73Oct 31, 2025Updated 10 months ago
- ☆14Mar 18, 2016Updated 10 years ago
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 学堂在线 课程视频及字幕 aria2下载脚本☆21Aug 27, 2017Updated 9 years ago
- Code for biostar tutorials - mostly R and Perl☆50Jul 31, 2024Updated 2 years ago
- R package for WebGestalt☆38Aug 10, 2026Updated 3 weeks ago
- Piranha is a peak-caller for CLIP- and RIP-seq data☆21Feb 7, 2018Updated 8 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 6 years ago
- four class intro to R: basic syntax, data manipulation, data viz☆22Dec 31, 2020Updated 5 years ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- <<Managing Your Biological Data with Python>> wirtten in Python 3☆34Sep 21, 2017Updated 8 years ago
- Course materials for the edX Data Analysis for Genomics☆36May 23, 2015Updated 11 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆31May 28, 2019Updated 7 years ago
- cDNA read preprocessing☆96Jul 25, 2024Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆35Jul 31, 2026Updated last month
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆13Apr 5, 2026Updated 4 months ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆65Jun 22, 2025Updated last year
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆23Jun 27, 2017Updated 9 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆26May 30, 2023Updated 3 years ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆20Oct 31, 2025Updated 10 months ago
- collection of notebooks with different cytoscape workflows☆51Mar 22, 2023Updated 3 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Apr 20, 2022Updated 4 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- Python 图片爬虫☆34Dec 17, 2017Updated 8 years ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 7 years ago
- NGS Tutorial☆15Apr 22, 2017Updated 9 years ago