chaolinzhanglab / ctkLinks
CLIP Tool Kit (CTK)
☆22Updated last year
Alternatives and similar repositories for ctk
Users that are interested in ctk are comparing it to the libraries listed below
Sorting:
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆18Updated last year
- ☆10Updated 3 weeks ago
- A computational workflow for exitron splicing identification☆12Updated 9 months ago
- ☆23Updated 4 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- ☆14Updated 7 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆19Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- documentation for trackViewer☆29Updated 5 years ago
- Define regions in the genome☆30Updated 3 years ago
- a set of NGS pipelines☆24Updated last week
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated last week
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 10 months ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- Demultiplexes a fastq.☆44Updated 4 years ago
- snakemake workflow for post-processing scATACseq data☆21Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago