gagneurlab / concise
Concise: Keras extension for regulatory genomics
☆35Updated 2 years ago
Alternatives and similar repositories for concise:
Users that are interested in concise are comparing it to the libraries listed below
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 7 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆32Updated 5 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated last year
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 2 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 6 years ago
- Tissue-specific variant effect predictions on splicing☆41Updated last year
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- ☆23Updated 4 years ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- ☆41Updated 6 years ago
- ☆11Updated 4 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆63Updated 3 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆25Updated this week
- ☆28Updated 2 years ago
- ☆10Updated 4 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- A Python package for gene network analysis☆32Updated 2 years ago