gagneurlab / conciseLinks
Concise: Keras extension for regulatory genomics
☆35Updated 2 years ago
Alternatives and similar repositories for concise
Users that are interested in concise are comparing it to the libraries listed below
Sorting:
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Updated 6 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- ☆41Updated 6 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- ☆51Updated last year
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 7 years ago
- Understanding sequence conservation with deep learning☆20Updated 8 years ago
- Computational biology utility scripts☆19Updated 3 months ago
- ☆20Updated 9 years ago
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Updated 7 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- Modelling DNA methylation profiles☆23Updated 4 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- DSDE Deep Learning Club☆40Updated 6 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- ☆14Updated 5 years ago