Xinglab / abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
☆13Updated last year
Alternatives and similar repositories for abPOA:
Users that are interested in abPOA are comparing it to the libraries listed below
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- ☆28Updated last year
- ☆32Updated 2 years ago
- Variant call adjudication☆16Updated 9 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆30Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 3 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated 11 months ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- A long-read analysis toolbox for cancer and population genomics☆22Updated last month
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- A software for discovery, genotyping and characterization of structural variants☆22Updated 6 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆29Updated 9 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- GBWT-based handle graph☆31Updated last week
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- ☆21Updated 5 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago