Xinglab / abPOALinks
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
☆13Updated last year
Alternatives and similar repositories for abPOA
Users that are interested in abPOA are comparing it to the libraries listed below
Sorting:
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆28Updated 2 months ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- ☆14Updated last year
- ☆21Updated 5 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆30Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- ☆32Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Convert HAL to VG☆22Updated 10 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆26Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- GBWT-based handle graph☆31Updated 3 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 7 years ago