singhal / popgen_tutorial
☆11Updated 5 years ago
Alternatives and similar repositories for popgen_tutorial:
Users that are interested in popgen_tutorial are comparing it to the libraries listed below
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆20Updated last year
- ☆13Updated 2 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆15Updated 5 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated last month
- Tools for inference of the DFE with dadi☆14Updated 3 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- ☆43Updated this week
- ☆17Updated 9 years ago
- Module for analysing admixture graphs☆28Updated 6 years ago
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- Sampling and inference of genealogies with recombination☆29Updated 6 months ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated 2 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated last year
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- The MafFilter genome alignment processor☆17Updated 6 months ago
- ☆12Updated 11 months ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- General purpose population genetics software☆12Updated 5 years ago