sridnona / cb_snifferLinks
mutation(barcode) caller for 10x single cell data
☆44Updated 5 years ago
Alternatives and similar repositories for cb_sniffer
Users that are interested in cb_sniffer are comparing it to the libraries listed below
Sorting:
- ☆34Updated 6 years ago
- scRNA-seq cell type identification☆44Updated 6 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- scWGCNA☆61Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆82Updated 3 years ago
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Count HLA alleles in single-cell RNA-seq data☆63Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 2 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆45Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- ☆53Updated last year
- ☆33Updated last year
- ☆48Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 5 months ago
- ☆56Updated 5 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- ☆87Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- ☆74Updated 2 years ago
- Inferring CNV data from single cell ATAC seq☆25Updated 7 months ago
- ☆17Updated 6 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago