☆34Jun 12, 2019Updated 6 years ago
Alternatives and similar repositories for SSrGE
Users that are interested in SSrGE are comparing it to the libraries listed below
Sorting:
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Nov 7, 2024Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Nov 27, 2024Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- ☆24Aug 2, 2024Updated last year
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Jan 6, 2026Updated last month
- Super high performance interactive heatmap software☆32Nov 19, 2018Updated 7 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Feb 23, 2026Updated last week
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Jun 18, 2018Updated 7 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆24Aug 20, 2024Updated last year
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35May 14, 2020Updated 5 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Jan 6, 2021Updated 5 years ago
- Single-cell Orientation Tracing☆22Jan 23, 2022Updated 4 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆24Feb 1, 2020Updated 6 years ago
- Clone identification from single-cell data☆62Nov 10, 2022Updated 3 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Jan 31, 2022Updated 4 years ago
- ☆14Nov 29, 2025Updated 3 months ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data☆11Jul 13, 2020Updated 5 years ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- ☆16May 13, 2022Updated 3 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- Population balance analysis☆44Apr 25, 2019Updated 6 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Differential Mutation Analysis☆11May 24, 2020Updated 5 years ago
- Calibrated clustering via knockoffs for single-cell genomics☆10Feb 13, 2025Updated last year
- Analyzes whole genome sequencing data for gene-editing verification☆10Feb 6, 2026Updated 3 weeks ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆25Jan 25, 2022Updated 4 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Nov 22, 2016Updated 9 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Oct 15, 2020Updated 5 years ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated last year
- Personal diploid genome creation and coordinate conversion☆30Apr 1, 2025Updated 11 months ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- ☆22Feb 7, 2020Updated 6 years ago
- scSNV Mapping tool for 10X Single Cell Data☆25Dec 19, 2025Updated 2 months ago