PgRC: Pseudogenome based Read Compressor
☆14Nov 20, 2024Updated last year
Alternatives and similar repositories for PgRC
Users that are interested in PgRC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorph…☆16Mar 3, 2022Updated 4 years ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- Multiple Bacteria Genome Compressor (MBGC)☆13Aug 29, 2026Updated last month
- ☆10Feb 22, 2023Updated 3 years ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identification of segmental duplications in the genome☆29Mar 1, 2022Updated 4 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆15May 6, 2024Updated 2 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Apr 14, 2019Updated 7 years ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆18Feb 24, 2024Updated 2 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Jun 9, 2020Updated 6 years ago
- ☆30Aug 2, 2026Updated 2 months ago
- A simulator for horizontal gene transfer (HGT) in microbial communities☆10Oct 5, 2020Updated 6 years ago
- ☆10Jan 18, 2023Updated 3 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- FaStore - high-performance FASTQ files compressor☆19May 19, 2022Updated 4 years ago
- Parallel k-mer indexing for biological sequences☆12Dec 14, 2018Updated 7 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences☆64Aug 1, 2025Updated last year
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 4 years ago
- Qiime2 snakemake pipeline☆20Dec 21, 2023Updated 2 years ago
- Computes graph connectivity for large graphs☆11Jan 30, 2017Updated 9 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 4 years ago
- Long-read metagenomic analysis☆112Oct 10, 2023Updated 3 years ago
- 16S pipeline using qiime2 created with snakemake☆12Sep 15, 2026Updated 3 weeks ago
- Nanopore desc☆18Aug 22, 2016Updated 10 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated last year
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 7 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 5 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- ☆33Jul 16, 2023Updated 3 years ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated last year