PgRC: Pseudogenome based Read Compressor
☆14Nov 20, 2024Updated last year
Alternatives and similar repositories for PgRC
Users that are interested in PgRC are comparing it to the libraries listed below
Sorting:
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆10Sep 3, 2025Updated 6 months ago
- ☆10Jun 9, 2020Updated 5 years ago
- ☆10Jan 18, 2023Updated 3 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 7 months ago
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 6 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorph…☆16Mar 3, 2022Updated 4 years ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆16May 6, 2024Updated last year
- ☆16Feb 5, 2026Updated last month
- GENome Organisation Visual Analytics☆15Dec 24, 2021Updated 4 years ago
- The shiny app that accompanies the ngsReports R package☆13Jun 10, 2021Updated 4 years ago
- ☆19Feb 15, 2025Updated last year
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 26, 2026Updated last week
- Scripts to reproduce TrioBinning manuscript☆17Mar 31, 2020Updated 5 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Apr 14, 2023Updated 2 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- Qiime2 snakemake pipeline☆20Dec 21, 2023Updated 2 years ago
- A tool for identifying active prophage elements through read mapping☆13Oct 9, 2023Updated 2 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- ☆16Apr 9, 2021Updated 4 years ago
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Mar 25, 2022Updated 3 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 2 weeks ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- Parallel/Homoplasic SNP Finder☆21May 3, 2023Updated 2 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 3 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆26Jan 30, 2026Updated last month
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- An RNA virus strain-level identification tool for short reads.☆23Jan 29, 2026Updated last month
- fastx-utils using klib☆20Sep 1, 2020Updated 5 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- ASTRAL for PaRalogs and Orthologs☆22Sep 13, 2022Updated 3 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 5 months ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆25Apr 17, 2025Updated 10 months ago