BGI-Qingdao / HASTLinks
HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy
☆19Updated 2 years ago
Alternatives and similar repositories for HAST
Users that are interested in HAST are comparing it to the libraries listed below
Sorting:
- Variant annotation and merging pipeline☆39Updated last month
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Updated 2 years ago
- Detection and genotyping of structural variants☆18Updated 4 months ago
- ☆78Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆19Updated 2 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 6 years ago
- ☆48Updated last year
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- ☆31Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 8 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆36Updated last year
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 3 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- ☆81Updated 6 months ago
- ☆31Updated 5 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 10 months ago
- ☆43Updated this week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 6 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆48Updated 7 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- ☆36Updated 2 years ago
- ☆30Updated 8 months ago
- Structural variant caller☆55Updated 3 years ago