Alternatives and similar repositories for HAST

Users that are interested in HAST are comparing it to the libraries listed below

• BGI-Qingdao / stlfr2supernova_pipeline
  A pipeline to de novo assemble the stLFR reads using Supernova Assembler
  ☆20Updated 2 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated 3 months ago
• caaswxb / SRY
  SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.
  ☆19Updated 2 years ago
• shilpagarg / DipAsm
  ☆79Updated 5 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• stat-lab / MOPline
  Detection and genotyping of structural variants
  ☆19Updated last week
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆28Updated 4 years ago
• Nextomics / nextsv
  ☆36Updated last year
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 9 months ago
• TheJacksonLaboratory / Picky
  Structural Variants Pipeline for Long Reads
  ☆44Updated 7 years ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆44Updated last year
• MeHelmy / princess
  ☆81Updated 7 months ago
• songbowang125 / SVision-pro
  ☆46Updated last month
• mcfrith / tandem-genotypes
  ☆49Updated last year
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆51Updated 4 years ago
• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆34Updated 7 years ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆103Updated 4 years ago
• farhangus / Sniffles2_plot
  ☆31Updated last year
• DovetailGenomics / HiRise_July2015_GR
  test repository
  ☆29Updated 2 years ago
• timplab / nanopore-methylation-utilities
  ☆30Updated 4 years ago
• benoukraflab / NanoVar
  Structural variant caller for low-depth long-read sequencing data
  ☆28Updated 9 months ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆38Updated last year
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆21Updated 3 years ago
• baozg / phased-assembly-check
  ☆31Updated 9 months ago
• vgteam / giraffe-sv-paper
  ☆43Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆41Updated 4 years ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆55Updated 3 years ago