HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy
☆18Apr 20, 2023Updated 2 years ago
Alternatives and similar repositories for HAST
Users that are interested in HAST are comparing it to the libraries listed below
Sorting:
- A simple tool to monitor a process group and record its CPU, MEM and time cost.☆19Mar 21, 2023Updated 2 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 4 years ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆19Aug 1, 2023Updated 2 years ago
- Metagenomics Taxonomic Reads Assembly Single-Species☆16May 25, 2023Updated 2 years ago
- ☆10Jun 9, 2020Updated 5 years ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Feb 22, 2023Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Aug 2, 2022Updated 3 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- Reference-free profiling of polyploid genomes☆141Oct 2, 2025Updated 5 months ago
- Fast & accurate alignment of barcoded short-reads☆32Jun 29, 2023Updated 2 years ago
- several scripts for bioinformatics☆24Nov 27, 2025Updated 3 months ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆20Dec 17, 2024Updated last year
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- kProcessor: kmers processing framework.☆10Oct 1, 2023Updated 2 years ago
- Whole genome workflows☆12Nov 9, 2024Updated last year
- R Package for phasing of single cell Strand-seq data☆10Jan 14, 2025Updated last year
- ☆10Jan 18, 2023Updated 3 years ago
- A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data☆13Oct 12, 2023Updated 2 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- ☆13Nov 29, 2022Updated 3 years ago
- ☆10Mar 4, 2025Updated last year
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 3 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆106Jun 6, 2021Updated 4 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆46Jun 21, 2020Updated 5 years ago
- FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation☆31Feb 16, 2022Updated 4 years ago
- ☆78Jun 12, 2020Updated 5 years ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- ☆12Nov 23, 2020Updated 5 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago