Alternatives and similar repositories for HAST:

Users that are interested in HAST are comparing it to the libraries listed below

• BGI-Qingdao / stlfr2supernova_pipeline
  A pipeline to de novo assemble the stLFR reads using Supernova Assembler
  ☆20Updated last year
• caaswxb / SRY
  SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.
  ☆18Updated last year
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆22Updated 2 years ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆46Updated 11 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 3 years ago
• ablab / VerityMap
  ☆34Updated last year
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆31Updated 3 weeks ago
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 3 years ago
• stat-lab / MOPline
  Detection and genotyping of structural variants
  ☆18Updated 3 months ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆32Updated 2 years ago
• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆33Updated 6 years ago
• BGI-Qingdao / SLR-superscaffolder
  A scaffold assembling pipeline for stLFR reads.
  ☆15Updated 3 years ago
• mcfrith / tandem-genotypes
  ☆48Updated 7 months ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 6 years ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆39Updated 2 months ago
• baozg / phased-assembly-check
  ☆29Updated 3 weeks ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆36Updated 6 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last month
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆59Updated 3 weeks ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆40Updated 3 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆30Updated 2 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• farhangus / Sniffles2_plot
  ☆27Updated 5 months ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago