BGI-Qingdao / HAST
HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy
☆18Updated last year
Alternatives and similar repositories for HAST:
Users that are interested in HAST are comparing it to the libraries listed below
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Updated 2 years ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Detection and genotyping of structural variants☆18Updated last month
- ☆76Updated 4 years ago
- A scaffold assembling pipeline for stLFR reads.☆15Updated 4 years ago
- Variant annotation and merging pipeline☆32Updated 2 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆42Updated last year
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 5 months ago
- ☆34Updated 2 years ago
- ☆42Updated 10 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 2 months ago
- TGS scaffolding☆46Updated 3 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 9 months ago
- SV calling for diploid assemblies☆26Updated last year
- ☆29Updated 2 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆47Updated last year
- ☆29Updated 7 months ago
- Structural variant caller☆54Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆34Updated 4 months ago
- ☆48Updated 9 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- ☆32Updated 2 weeks ago
- ☆29Updated 4 years ago