Munge GenBank files into FASTA and tab-separated metadata
☆15Feb 5, 2026Updated 7 months ago
Alternatives and similar repositories for gbmunge
Users that are interested in gbmunge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Sep 12, 2021Updated 5 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Aug 25, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆25Jun 25, 2024Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated 2 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated last year
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- VAPiD: Viral Annotation and Identification Pipeline☆59May 29, 2024Updated 2 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 11 months ago
- ☆38Jan 12, 2026Updated 8 months ago
- ☆51Mar 11, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆21Apr 2, 2025Updated last year
- Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).☆56May 25, 2022Updated 4 years ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆26Jun 16, 2021Updated 5 years ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 8 years ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆72May 30, 2026Updated 3 months ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆44Nov 20, 2019Updated 6 years ago
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated last year
- Phylogenetic tree library for JavaScript/Node.js☆39Nov 16, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated 4 months ago
- A Pedantic FASTA Parser and Tool Set☆14Apr 22, 2020Updated 6 years ago
- Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM☆28Feb 6, 2024Updated 2 years ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆42Jul 11, 2025Updated last year
- ☆13Jul 20, 2026Updated 2 months ago
- Primer schemes for real-time genome epidemiology☆31Jun 14, 2023Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- Detection of viruses from RNA-Seq on human samples☆46Mar 18, 2023Updated 3 years ago
- Calculate assocations between genes and traits☆32Mar 10, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Bioinformatics pipeline used in the Laboratory of Viral Metagenomics (KU Leuven) to trim and assemble paired-end Illumina reads, and clas…☆11Nov 6, 2025Updated 10 months ago
- Pangenome Analysis in Prokaryotes Lesson☆13Aug 20, 2024Updated 2 years ago
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated 5 months ago
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 5 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 5 months ago
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 9 months ago
- Read Assignment, Mapping, and Phylogenetic Analysis in Real Time☆87Mar 2, 2026Updated 6 months ago