sdwfrost / gbmungeLinks
Munge GenBank files into FASTA and tab-separated metadata
☆15Updated last year
Alternatives and similar repositories for gbmunge
Users that are interested in gbmunge are comparing it to the libraries listed below
Sorting:
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Split Kmer Analysis☆66Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 5 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 5 months ago
- A set of scripts for calculating pairwise SNP distance☆43Updated 2 years ago
- Gene-flank analysis tool☆34Updated 11 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 8 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Updated 3 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- Strain Resolution ON Graphs☆49Updated 2 years ago
- The Zika bioinformatics pipeline☆36Updated 5 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 2 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- ☆30Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 3 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Find Unique genomic Regions☆32Updated last month
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆32Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆41Updated 4 months ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated 5 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 8 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- ☆29Updated 4 years ago