sdwfrost / gbmungeLinks
Munge GenBank files into FASTA and tab-separated metadata
☆15Updated 2 years ago
Alternatives and similar repositories for gbmunge
Users that are interested in gbmunge are comparing it to the libraries listed below
Sorting:
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 8 months ago
- Visualize whole genome alignments as linear maps☆74Updated 5 months ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- Detection of incorrectly labeled sequences across kingdoms☆87Updated 3 years ago
- A set of scripts for calculating pairwise SNP distance☆44Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last year
- Split Kmer Analysis☆66Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 3 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆32Updated last year
- Fast and space-efficient taxonomic classification of long reads☆42Updated 4 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago
- Find Unique genomic Regions☆32Updated 2 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- ☆29Updated 4 years ago
- tree visualization for tree + annotation data☆45Updated 6 months ago
- Recombination-free trees☆63Updated 4 months ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Updated 4 months ago
- ☆43Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Prokaryotic Pangenome Analysis☆24Updated 4 years ago
- Gene-flank analysis tool☆34Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago