π¦ A tool for identifying and analyzing functions in microbial genomes.
β16Sep 25, 2024Updated last year
Alternatives and similar repositories for ProkFunFind
Users that are interested in ProkFunFind are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code used to analyse and plot metadata of metagenomic binning toolsβ14Aug 22, 2024Updated 2 years ago
- β15Aug 6, 2020Updated 6 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architectureβ42Feb 9, 2022Updated 4 years ago
- β25Feb 7, 2022Updated 4 years ago
- zDB: comparative bacterial genomics made easyβ42Aug 25, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Download NCBI assembly genomes with ftp. rsync, ascpβ12Aug 2, 2022Updated 4 years ago
- ancestral reconstruction and likelihood analysis for CRISPR spacer arraysβ11May 7, 2025Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigsβ33Aug 22, 2024Updated 2 years ago
- β56May 5, 2025Updated last year
- ISCompare, an opensource program to identify Differentially Located Insertion Sequencesβ14Apr 30, 2026Updated 4 months ago
- ZGA prokaryotic genome assembly and annotation pipelineβ13Sep 13, 2024Updated last year
- β12Jun 3, 2025Updated last year
- Gene Absence Presence Identification tool.β27Mar 28, 2025Updated last year
- Package that facilitates pulling database entries from KEGG via its REST APIβ14Aug 12, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This repository contains a QSAR model that predicts the ability of a chemical compound to inhibit the gene associated with Alzheimer's, Bβ¦β11Oct 1, 2021Updated 4 years ago
- β11Sep 16, 2020Updated 5 years ago
- R markdown documents copied from other folders on Dec 15th 2021β14Nov 4, 2025Updated 9 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.β263May 13, 2026Updated 3 months ago
- Download assembly files from NCBIβ12May 9, 2023Updated 3 years ago
- Temporal Pathway Synthesizerβ17Jun 28, 2024Updated 2 years ago
- A repo to reproduce the experiments in the YACHT manuscriptβ12Nov 2, 2023Updated 2 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codesβ55Oct 12, 2023Updated 2 years ago
- strain-level analysis toolsβ41Oct 21, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A hybrid assembly and MAG recovery pipeline (and more!)β118Updated this week
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.β18Aug 7, 2026Updated 3 weeks ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomesβ11Sep 27, 2019Updated 6 years ago
- Meta package for processing and visualizing tree with dataβ29Nov 1, 2021Updated 4 years ago
- Munge GenBank files into FASTA and tab-separated metadataβ15Feb 5, 2026Updated 6 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.β21Oct 26, 2021Updated 4 years ago
- post processing of bacterial pangenome gene presence/absence matricesβ68Jan 19, 2026Updated 7 months ago
- β17Aug 13, 2026Updated 2 weeks ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaeaβ110Jun 25, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- β11Jul 3, 2022Updated 4 years ago
- β38Apr 15, 2024Updated 2 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databasβ¦β18Nov 29, 2023Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times fasterβ56May 8, 2026Updated 3 months ago
- β19Nov 7, 2025Updated 9 months ago
- Wide and Deep Neural Net for predicting TB resistance from genotypic dataβ14Dec 9, 2019Updated 6 years ago
- π¦ π§¬π§βπ»π Microbial genomes-to-report pipelineβ75Updated this week