π¦ A tool for identifying and analyzing functions in microbial genomes.
β16Sep 25, 2024Updated last year
Alternatives and similar repositories for ProkFunFind
Users that are interested in ProkFunFind are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β15Aug 6, 2020Updated 5 years ago
- Temporal Pathway Synthesizerβ17Jun 28, 2024Updated last year
- Meta package for processing and visualizing tree with dataβ29Nov 1, 2021Updated 4 years ago
- Package that facilitates pulling database entries from KEGG via its REST APIβ12Updated this week
- β11Sep 16, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- zDB: comparative bacterial genomics made easyβ40May 6, 2026Updated last month
- Location of structural errors in a genome assembly and structural variations between a pair of genomesβ11Sep 27, 2019Updated 6 years ago
- Munge GenBank files into FASTA and tab-separated metadataβ15Feb 5, 2026Updated 4 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.β21Oct 26, 2021Updated 4 years ago
- This repository contains a QSAR model that predicts the ability of a chemical compound to inhibit the gene associated with Alzheimer's, Bβ¦β11Oct 1, 2021Updated 4 years ago
- Minecraft Beta 1.7.3 compatible world generator. ARCHIVED: This code has been moved to a monorepo, please see https://github.com/coderbotβ¦β11Nov 24, 2018Updated 7 years ago
- R package for microbial pangenomicsβ24Apr 12, 2022Updated 4 years ago
- Bacterial taxonomy construction and evaluation in Rβ16Jan 30, 2024Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performanceβ22Mar 8, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- β55May 5, 2025Updated last year
- β14Feb 17, 2022Updated 4 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutionsβ11Mar 10, 2022Updated 4 years ago
- Calculate assocations between genes and traitsβ31Mar 10, 2025Updated last year
- A library for incremental computationsβ17Apr 1, 2026Updated 2 months ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categβ¦β26Jun 16, 2021Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strainsβ50Jan 14, 2026Updated 5 months ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimensionβ14Jul 22, 2025Updated 10 months ago
- A toolbox for comparative genomics.β110May 26, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequencesβ22Dec 16, 2024Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigsβ33Aug 22, 2024Updated last year
- β14Mar 18, 2022Updated 4 years ago
- community detection in multiplex networksβ10Apr 23, 2016Updated 10 years ago
- 𧬠MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotationsβ38May 21, 2024Updated 2 years ago
- Fast alignment-free pangenome creation and explorationβ28Apr 16, 2020Updated 6 years ago
- β22Apr 3, 2023Updated 3 years ago
- Simulating paired-end short sequencing reads from circular and linear genomesβ15May 14, 2021Updated 5 years ago
- post processing of bacterial pangenome gene presence/absence matricesβ66Jan 19, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code used to analyse and plot metadata of metagenomic binning toolsβ14Aug 22, 2024Updated last year
- Pan-genome wide association studiesβ219May 29, 2024Updated 2 years ago
- Combining de novo and reference-guided assembly with Scaffold_builderβ20May 30, 2026Updated 2 weeks ago
- Little code snippets that do (hopefully) useful thingsβ23Jul 24, 2023Updated 2 years ago
- A fast constructor of the compressed de Bruijn graph from many genomesβ42Nov 27, 2025Updated 6 months ago
- De Bruijn graph representation in low memoryβ36Jul 6, 2024Updated last year
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.β12Apr 13, 2026Updated 2 months ago