zibraproject / zika-pipelineLinks
The Zika bioinformatics pipeline
☆35Updated 5 years ago
Alternatives and similar repositories for zika-pipeline
Users that are interested in zika-pipeline are comparing it to the libraries listed below
Sorting:
- Protein Alignment and Detection Interface☆61Updated last year
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆59Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆39Updated last month
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated 11 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated last week
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 2 weeks ago
- ☆41Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆62Updated last year
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Filter SAM file for soft and hard clipped alignments☆49Updated last year
- Visualize whole genome alignments as linear maps☆73Updated 9 months ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆26Updated 3 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago