zibraproject / zika-pipeline
The Zika bioinformatics pipeline
☆36Updated 5 years ago
Alternatives and similar repositories for zika-pipeline
Users that are interested in zika-pipeline are comparing it to the libraries listed below
Sorting:
- de novo virus assembler of Illumina paired reads☆55Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆59Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ☆52Updated 4 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆40Updated 5 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- de.NBI Nanopore Training Course☆20Updated 2 years ago
- Synteny Imager☆62Updated 8 months ago
- Split Kmer Analysis☆64Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- ☆36Updated 3 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆15Updated 2 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Merge transcriptome assemblies☆31Updated 8 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Updated last year
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago