zibraproject / zika-pipeline
The Zika bioinformatics pipeline
☆36Updated 4 years ago
Alternatives and similar repositories for zika-pipeline:
Users that are interested in zika-pipeline are comparing it to the libraries listed below
- Split Kmer Analysis☆62Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- de novo virus assembler of Illumina paired reads☆55Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated last month
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 11 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆33Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 8 months ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 2 months ago
- Primer schemes for real-time genome epidemiology☆27Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- ☆36Updated 2 years ago
- ☆52Updated 3 years ago
- Find Unique genomic Regions☆29Updated this week
- ☆26Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆58Updated last year
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Benchmark datasets for WGS analysis☆37Updated 5 years ago
- ☆26Updated 4 years ago
- Gene-flank analysis tool☆27Updated 3 months ago
- ☆35Updated 3 weeks ago