alliblk / genepi-bookLinks
☆20Updated 11 months ago
Alternatives and similar repositories for genepi-book
Users that are interested in genepi-book are comparing it to the libraries listed below
Sorting:
- Bacterial surveillance pipeline.☆24Updated 3 weeks ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆39Updated this week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- SC2 variant detection and composition pipeline☆17Updated last year
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆36Updated 6 months ago
- Precise host read removal☆99Updated last month
- Bioinformatics Pipeline and Visualization resources☆55Updated 9 months ago
- Code Safety Inspection Service☆20Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 3 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Primer schemes for real-time genome epidemiology☆28Updated last year
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆35Updated 3 years ago
- UPHL's Reference Free Pipeline☆26Updated 3 weeks ago
- Consensus sequences for each Pango lineage☆21Updated this week
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Recombination-free trees☆58Updated 2 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 9 months ago
- ARG normalization by mapping to the ARO ontology.☆57Updated last month
- ☆36Updated last month
- ARTIC SARS-CoV-2 workflow and reporting☆51Updated last month
- Standard database for the TBProfiler tool☆29Updated 2 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆35Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆79Updated 2 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023☆105Updated 2 weeks ago
- SeqSero2☆35Updated last year
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆36Updated 2 weeks ago