alliblk / genepi-bookLinks
☆23Updated last year
Alternatives and similar repositories for genepi-book
Users that are interested in genepi-book are comparing it to the libraries listed below
Sorting:
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆46Updated last week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆80Updated last year
- Precise host read removal☆102Updated 2 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated last year
- Bioinformatics Pipeline and Visualization resources☆57Updated last year
- ARG normalization by mapping to the ARO ontology.☆58Updated last month
- Reorients assembled microbial sequences☆125Updated last week
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆37Updated 3 weeks ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆115Updated last week
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- a collection of scripts for organising bacterial genomes by species☆77Updated 3 years ago
- Reference-based consensus creation☆56Updated last week
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆71Updated 4 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆25Updated 3 years ago
- Code Safety Inspection Service☆20Updated 2 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆57Updated 3 weeks ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 4 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- Depth-weighted De-Mixing☆119Updated this week
- Standard database for the TBProfiler tool☆31Updated 2 weeks ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆72Updated this week
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆91Updated 3 weeks ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week