alliblk / genepi-bookLinks
☆21Updated last year
Alternatives and similar repositories for genepi-book
Users that are interested in genepi-book are comparing it to the libraries listed below
Sorting:
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆45Updated this week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆79Updated 11 months ago
- Precise host read removal☆103Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 5 months ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆37Updated this week
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆55Updated last month
- a collection of scripts for organising bacterial genomes by species☆77Updated 3 years ago
- The ARTIC field bioinformatics pipeline☆125Updated 3 weeks ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated 2 months ago
- Primer schemes for real-time genome epidemiology☆29Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆135Updated 3 months ago
- Code Safety Inspection Service☆20Updated 2 years ago
- ARG normalization by mapping to the ARO ontology.☆58Updated 2 weeks ago
- Reorients assembled microbial sequences☆124Updated 4 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆45Updated 8 months ago
- Standard database for the TBProfiler tool☆30Updated last week
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 3 months ago
- Influenza data pipeline to automate genotyping assignment☆37Updated 2 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆50Updated 2 weeks ago
- A tool for removing redundant genomes from a set of assemblies☆73Updated last year
- ☆83Updated last year
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆64Updated 2 years ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆109Updated last month
- Reference-based consensus creation☆56Updated this week
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 3 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- Bifrost graph gene caller.☆95Updated 10 months ago