jts / ncov-toolsLinks
Small collection of tools for performing quality control on coronavirus sequencing data and genomes
☆49Updated last year
Alternatives and similar repositories for ncov-tools
Users that are interested in ncov-tools are comparing it to the libraries listed below
Sorting:
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 5 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 3 years ago
- Bioinformatics Pipeline and Visualization resources☆60Updated last year
- Split Kmer Analysis☆67Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆94Updated 2 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆61Updated this week
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated 2 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 5 months ago
- ☆84Updated 2 years ago
- Rapid determination of appropriate reference genomes.☆99Updated last year
- CRyPTIC data processing pipelines☆34Updated last year
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 3 months ago
- ☆37Updated 3 years ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆86Updated last year
- ☆37Updated 3 weeks ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated last month
- Primer schemes for real-time genome epidemiology☆30Updated 2 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆103Updated this week
- A tool for Racon polishing of miniasm assemblies☆78Updated 5 months ago
- Standard database for the TBProfiler tool☆31Updated 5 months ago
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Updated 10 months ago
- rapidly rid reads of horrid humans☆15Updated 4 years ago
- Split k-mer analysis – version 2☆104Updated last week
- ☆81Updated 5 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆41Updated 4 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆41Updated this week