jts / ncov-toolsLinks
Small collection of tools for performing quality control on coronavirus sequencing data and genomes
☆48Updated last year
Alternatives and similar repositories for ncov-tools
Users that are interested in ncov-tools are comparing it to the libraries listed below
Sorting:
- CRyPTIC data processing pipelines☆34Updated 11 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- Bioinformatics Pipeline and Visualization resources☆56Updated 9 months ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆92Updated last year
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆31Updated 3 weeks ago
- Rapid determination of appropriate reference genomes.☆97Updated 5 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆42Updated 7 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆51Updated 2 months ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆83Updated 6 months ago
- A tool for Racon polishing of miniasm assemblies☆76Updated 3 weeks ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 10 months ago
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆57Updated 2 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆88Updated last month
- ☆82Updated last year
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- SC2 variant detection and composition pipeline☆17Updated last year
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated 2 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Standard database for the TBProfiler tool☆29Updated last week
- Split Kmer Analysis☆65Updated 3 years ago
- ☆22Updated last year
- Split k-mer analysis – version 2☆87Updated 4 months ago
- WtP: Phage identification via nextflow and docker or singularity☆105Updated last month
- A MinION-based pipeline for tracking species biodiversity☆13Updated last year
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 8 months ago
- SKESA assembler☆119Updated 8 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆36Updated last week
- ☆24Updated 6 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆99Updated this week