vestalisvirginis / synphageView external linksLinks
Pipeline to create phage genome synteny graphics from genbank files
☆14Oct 28, 2024Updated last year
Alternatives and similar repositories for synphage
Users that are interested in synphage are comparing it to the libraries listed below
Sorting:
- ToxPipe: Semi-autonomous AI integration of diverse toxicological data streams☆12May 3, 2024Updated last year
- R package to provide data access to Semantic Scholar through their lightweight API for scientific literature.☆12Nov 21, 2025Updated 2 months ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 3 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Mar 25, 2025Updated 10 months ago
- Munge GenBank files into FASTA and tab-separated metadata☆15Feb 5, 2026Updated last week
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- ☆22Dec 9, 2023Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Virus Identification☆25May 26, 2025Updated 8 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- The viral taxonomic assignment pipeline☆42Feb 5, 2026Updated last week
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Kraken(2) database based on the GTDB project☆28Dec 20, 2018Updated 7 years ago
- PDBClean helps create a curated ensemble of molecular structures☆14Oct 23, 2025Updated 3 months ago
- Burrows-Wheeler Aligner for x86,x86_64, arm and aarch64 architectures (PC, Raspberry PI, ODROID, M1)☆10Apr 13, 2022Updated 3 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆78Apr 16, 2025Updated 9 months ago
- Exploring the "dusk matter" of the RNA virosphere☆37Mar 25, 2022Updated 3 years ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 2 months ago
- Library for conditional Gaussian mixture models, compatible with scikit-learn.☆38Oct 1, 2025Updated 4 months ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 2 years ago
- RSpace running on Docker☆12Jul 11, 2025Updated 7 months ago
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10May 17, 2024Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Jan 9, 2026Updated last month
- ☆11Mar 16, 2024Updated last year
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 7 years ago
- ☆13Oct 23, 2024Updated last year
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- phylogenetic networks using ggplot2 and ggtree☆11Oct 22, 2025Updated 3 months ago
- Phylogenetic tools for Eco-phylogenetics☆14Oct 10, 2024Updated last year
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 6 months ago
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆11Jul 4, 2025Updated 7 months ago
- ☆15Jun 9, 2025Updated 8 months ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 4 years ago
- Microbiome profiling☆15Nov 20, 2025Updated 2 months ago