Pipeline to create phage genome synteny graphics from genbank files
☆21May 26, 2026Updated 2 months ago
Alternatives and similar repositories for synphage
Users that are interested in synphage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ToxPipe: Semi-autonomous AI integration of diverse toxicological data streams☆12May 3, 2024Updated 2 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 3 months ago
- R package to provide data access to Semantic Scholar through their lightweight API for scientific literature.☆13Jun 19, 2026Updated last month
- Assembling phage particles one protein at a time☆24May 4, 2026Updated 2 months ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 2 months ago
- Phage-Host Interaction Search Tool☆33Jul 8, 2024Updated 2 years ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆29Jul 18, 2026Updated last week
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆23Mar 20, 2026Updated 4 months ago
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- Munge GenBank files into FASTA and tab-separated metadata☆15Feb 5, 2026Updated 5 months ago
- Phage Annotation using Protein Structures☆168Jul 20, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆22Dec 9, 2023Updated 2 years ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- RBPseg: A Tool for Tail Fiber Structure Prediction☆16Jan 27, 2026Updated 6 months ago
- Autohotkey Script for automating the use of ObsidianHTML and Quarto/RMarkdown to generate pandoc-rendered files from Obsidian.MD's markdo…☆15Jun 9, 2025Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- Virus Identification☆27May 26, 2025Updated last year
- Convert GFF file to GenBank file format while extracting the sequences between the annotated regions☆14Sep 6, 2023Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- ☆23Sep 26, 2025Updated 10 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Alfred Workflow to create an empty file in the current Finder window☆12Nov 1, 2023Updated 2 years ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆220Jul 20, 2026Updated last week
- KBase distribution module for RASTtk.☆13Sep 14, 2020Updated 5 years ago
- A short tutorial for Tax4Fun2☆26Aug 24, 2024Updated last year
- This is a read-only mirror of the CRAN R package repository. fastcluster — Fast Hierarchical Clustering Routines for R and 'Python'. Ho…☆10May 7, 2025Updated last year
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Feb 3, 2021Updated 5 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆110Jul 7, 2026Updated 3 weeks ago
- A genome visualization python package for comparative genomics☆416Jun 14, 2026Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆55Oct 12, 2023Updated 2 years ago
- Kraken(2) database based on the GTDB project☆28Dec 20, 2018Updated 7 years ago
- ORION is a tool that ingests datasets from diverse knowledge bases and transforms them into modular, interoperable knowledge graphs.☆18Updated this week
- ☆19Nov 27, 2022Updated 3 years ago
- Cheminformatics Toolkit for R☆17Mar 12, 2026Updated 4 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Dec 4, 2025Updated 7 months ago
- Graphical Representation of Ancestral Sequence Predictions☆14Mar 6, 2023Updated 3 years ago