☆38Jan 12, 2026Updated 9 months ago
Alternatives and similar repositories for gofasta
Users that are interested in gofasta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PCR primer scheme definitions☆12Sep 8, 2026Updated last month
- MultiQC plugin replicating the most used plots and tables from Illumina's SAV☆11Aug 31, 2026Updated last month
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 9 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆40Aug 21, 2026Updated 2 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆123Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Ultrafast identification of signature sequences in microbial genomes☆26Updated this week
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆17Oct 9, 2026Updated 3 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomes☆33Oct 5, 2026Updated 3 weeks ago
- The repository for the Viral Genomics and Bioinformatics 2022 course☆11Jul 5, 2024Updated 2 years ago
- Cluster Investigation & Virus Epidemiology Tool☆51Jul 6, 2026Updated 3 months ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 4 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆265Updated this week
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆92Nov 8, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆30Mar 6, 2025Updated last year
- Main development repository for SpreadGL☆24Jun 18, 2026Updated 4 months ago
- Genome size estimation from long read overlaps☆98Sep 8, 2026Updated last month
- Population analysis PIPEline 🛠🧬☆28Mar 2, 2026Updated 7 months ago
- Fast DNA search and [host] depletion using minimizers☆128Updated this week
- Local alignment search with k-bounded matching statistics.☆24Oct 12, 2026Updated 2 weeks ago
- Build phylogenomic datasets in seconds☆15Updated this week
- Rust bindings to Intelligent Storage Acceleration Library (ISA-L)☆15Feb 2, 2025Updated last year
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bifrost graph gene caller.☆102Aug 31, 2026Updated last month
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Oct 19, 2026Updated last week
- Primer schemes for real-time genome epidemiology☆32Jun 14, 2023Updated 3 years ago
- A set of scripts for calculating pairwise SNP distance☆45Feb 19, 2026Updated 8 months ago
- Ultrafast Sample Placement on Existing Trees☆141Jun 1, 2026Updated 4 months ago
- snipit: summarise snps relative to your reference sequence☆179Jan 13, 2026Updated 9 months ago
- ☆50Updated this week
- ☆39Oct 22, 2026Updated last week
- A library for efficient nucleotide sequence manipulation using 2-bit encoding☆12Sep 28, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A multi-algorithmic framework for phylogenetic inference☆14Updated this week
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated 5 months ago
- Munge GenBank files into FASTA and tab-separated metadata☆15Feb 5, 2026Updated 8 months ago
- Split k-mer analysis – version 2☆109Oct 20, 2026Updated last week
- Taxonomic Classification of Bacteria and Archaea Genomes☆19Aug 17, 2026Updated 2 months ago
- Filter SAM file for soft and hard clipped alignments☆53Dec 31, 2025Updated 9 months ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated last year