grailbio / doppelmarkLinks
NGS duplicate marking
☆19Updated 4 years ago
Alternatives and similar repositories for doppelmark
Users that are interested in doppelmark are comparing it to the libraries listed below
Sorting:
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ☆23Updated last week
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Building the constrained coding regions (CCR) model☆16Updated 7 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Ultra Fast NGS Data QC Tool☆28Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Updated 2 weeks ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 7 months ago
- ☆29Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- ☆14Updated 2 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Call regions of homozygosity and make tentative UPD calls☆12Updated 6 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- fastq quality assessment and filtering tool☆18Updated 3 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- ☆13Updated 3 years ago