grailbio / doppelmarkLinks
NGS duplicate marking
☆19Updated 4 years ago
Alternatives and similar repositories for doppelmark
Users that are interested in doppelmark are comparing it to the libraries listed below
Sorting:
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- ☆13Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Updated 9 months ago
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- Rapid and accurate ancestry inference using SNVs.☆28Updated 3 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 3 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 6 months ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- fastq quality assessment and filtering tool☆18Updated 3 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated last year
- ☆14Updated 2 years ago
- ☆23Updated last week
- Ultra Fast NGS Data QC Tool☆28Updated 4 years ago
- Long RNA-seq analysis workflow☆21Updated last month
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Structural variant pipeline☆17Updated 5 years ago