grailbio / doppelmarkLinks
NGS duplicate marking
☆19Updated 4 years ago
Alternatives and similar repositories for doppelmark
Users that are interested in doppelmark are comparing it to the libraries listed below
Sorting:
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 3 weeks ago
- (WIP) best-practices workflow for rare disease☆60Updated 11 months ago
- k-mer similarity analysis pipeline☆21Updated 3 weeks ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated 4 months ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 4 months ago
- drunk on perbase pileups and lua expressions☆19Updated last month
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆17Updated last month
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- ☆22Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- Unfazed by genomic variant phasing☆26Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- ☆14Updated last year
- A transposition caller.☆10Updated last year
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆9Updated 7 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- ☆11Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago