grailbio / doppelmarkLinks
NGS duplicate marking
☆19Updated 4 years ago
Alternatives and similar repositories for doppelmark
Users that are interested in doppelmark are comparing it to the libraries listed below
Sorting:
- Rapid and accurate ancestry inference using SNVs.☆26Updated last month
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 2 months ago
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated 11 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- ☆22Updated 3 weeks ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆29Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ☆14Updated 2 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Ultra Fast NGS Data QC Tool☆27Updated 4 years ago
- 🍶 Genome assembly with short sequence reads☆26Updated last year
- extract SV signal from a BAM☆11Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago