CSB5 / lofreqLinks
LoFreq Star: Sensitive variant calling from sequencing data
☆109Updated 3 months ago
Alternatives and similar repositories for lofreq
Users that are interested in lofreq are comparing it to the libraries listed below
Sorting:
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated this week
- BAM Statistics, Feature Counting and Annotation☆152Updated last month
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 4 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- ☆122Updated 5 months ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated last month
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated last year
- ☆96Updated 3 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)☆41Updated 2 years ago
- Long read aligner☆115Updated 2 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated this week
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago