☆51Mar 11, 2022Updated 4 years ago
Alternatives and similar repositories for ProblematicSites_SARS-CoV2
Users that are interested in ProblematicSites_SARS-CoV2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- Global phylogenies of SARS-CoV-2 sequences☆86Oct 24, 2023Updated 2 years ago
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆32Apr 10, 2026Updated 2 months ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆60Mar 23, 2023Updated 3 years ago
- A tool for exploring large trees in the browser☆133May 7, 2026Updated last month
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated last month
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 6 months ago
- Ultrafast Sample Placement on Existing Trees☆140Jun 1, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated 3 months ago
- The ARTIC fieldbioinformatics pipeline☆133Apr 28, 2026Updated last month
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Updated this week
- ☆25Jun 25, 2024Updated last year
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 6 months ago
- Programmatically interact with the GISAID database.☆82Aug 5, 2025Updated 10 months ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆32Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Munge GenBank files into FASTA and tab-separated metadata☆15Feb 5, 2026Updated 4 months ago
- ☆75Jan 23, 2024Updated 2 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆72May 30, 2026Updated 2 weeks ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆259May 26, 2026Updated 2 weeks ago
- Informal summaries of notable SARS-CoV-2 lineages☆111Jun 1, 2026Updated last week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆454Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Aug 18, 2024Updated last year
- Repo for PrimerSchemes☆17Updated this week
- Consensus sequences for each Pango lineage☆23Jun 27, 2025Updated 11 months ago
- Primer schemes for real-time genome epidemiology☆30Jun 14, 2023Updated 3 years ago
- SARS-CoV-2 genomics☆16Jun 20, 2025Updated 11 months ago
- ☆38Jan 12, 2026Updated 5 months ago
- SC2 variant detection and composition pipeline☆19Jul 14, 2023Updated 2 years ago