W-L / ProblematicSites_SARS-CoV2
☆48Updated 3 years ago
Alternatives and similar repositories for ProblematicSites_SARS-CoV2:
Users that are interested in ProblematicSites_SARS-CoV2 are comparing it to the libraries listed below
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 3 months ago
- Primer schemes for real-time genome epidemiology☆27Updated last year
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆54Updated 2 years ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆48Updated 11 months ago
- Bioinformatics Pipeline and Visualization resources☆55Updated 7 months ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆29Updated 2 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆35Updated 3 weeks ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆35Updated 2 years ago
- Simple bacterial assembly and annotation pipeline☆70Updated this week
- SC2 variant detection and composition pipeline☆17Updated last year
- Consensus sequences for each Pango lineage☆21Updated this week
- Phylogenetics between and within hosts at once, all along the genome.☆48Updated 5 months ago
- SARS-CoV-2 workflow for nanopore sequence data☆40Updated this week
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆30Updated 2 months ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Programmatically interact with the GISAID database.☆73Updated 6 months ago
- ☆35Updated 3 weeks ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated 3 months ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆65Updated 2 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆33Updated this week
- ☆19Updated 4 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 4 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆97Updated last week
- CDCgov/mycosnp-nf☆49Updated this week
- Standard database for the TBProfiler tool☆29Updated 3 weeks ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆73Updated last year
- Process consensus file for COG-UK data☆14Updated 3 years ago