W-L / ProblematicSites_SARS-CoV2Links
☆49Updated 3 years ago
Alternatives and similar repositories for ProblematicSites_SARS-CoV2
Users that are interested in ProblematicSites_SARS-CoV2 are comparing it to the libraries listed below
Sorting:
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- Primer schemes for real-time genome epidemiology☆29Updated 2 years ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆48Updated last year
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated 3 weeks ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 2 months ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆109Updated last week
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆55Updated 2 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆98Updated 3 years ago
- Bioinformatics Pipeline and Visualization resources☆56Updated 10 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆36Updated this week
- Precise host read removal☆101Updated last month
- ☆36Updated 3 months ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 2 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…☆59Updated 7 months ago
- Ultrafast Sample Placement on Existing Trees☆130Updated last week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆79Updated 10 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 2 months ago
- Rapid determination of appropriate reference genomes.☆98Updated 5 months ago
- Phylogenetics between and within hosts at once, all along the genome.☆49Updated 9 months ago
- Split k-mer analysis – version 2☆87Updated 5 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆42Updated 7 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆106Updated 3 weeks ago
- CLI tool to annotate genes with KOfam☆82Updated 2 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- Split Kmer Analysis☆65Updated 3 years ago