Alternatives and similar repositories for sherpas

Users that are interested in sherpas are comparing it to the libraries listed below

• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆25Updated 2 years ago
• salzberg-lab / bolotie
  SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
  ☆13Updated 2 years ago
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 4 years ago
• SushiLab / mVIRs
  ☆13Updated last year
• jnalanko / syotti
  Minimum Bait Cover Toolkit Syotti.
  ☆13Updated last year
• lh3 / nasw
  Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift
  ☆19Updated last year
• hallamlab / FragGeneScanPlus
  Scalable high-throughput short-read open reading frame prediction
  ☆12Updated 9 years ago
• iqbal-lab-org / simutator
  Simulate mutations in genomes
  ☆15Updated 5 years ago
• duchene / phylomad
  ☆19Updated last year
• pg-space / panspace
  Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes
  ☆21Updated last month
• JLSteenwyk / BioKIT
  a versatile toolkit for processing and analyzing diverse types of sequence data
  ☆22Updated last year
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year
• bede / seqsum
  Robust individual and aggregate checksums for nucleotide sequences
  ☆17Updated 2 years ago
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 7 years ago
• AliTVTeam / AliTV-perl-interface
  ☆11Updated 4 years ago
• colindaven / guppy_on_slurm
  Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
  ☆16Updated last year
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆24Updated 3 weeks ago
• SR-Martin / alvis
  ☆20Updated 2 years ago
• artic-network / readucks
  Nanopore read de-multiplexer
  ☆13Updated 5 years ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆24Updated last month
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 8 months ago
• maxemil / PhyloMagnet
  screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
  ☆11Updated 5 years ago
• arzwa / Whale.jl
  Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
  ☆16Updated 9 months ago
• caraweisman / abSENSE
  Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…
  ☆18Updated last year
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆17Updated 3 years ago
• phac-nml / neptune
  Neptune: Genomic Signature Discovery
  ☆21Updated last year
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆15Updated 8 months ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 6 years ago