grubaughlab / DENV_pipeline
☆16Updated last month
Alternatives and similar repositories for DENV_pipeline
Users that are interested in DENV_pipeline are comparing it to the libraries listed below
Sorting:
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆37Updated last week
- Estimating time trees from very large phylogenies☆26Updated 9 months ago
- ☆20Updated last month
- Utility to alias and dealias pango lineages☆22Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆17Updated 3 weeks ago
- ☆11Updated 3 months ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆13Updated last month
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆31Updated this week
- An R-wrapper for lsd2☆9Updated 2 years ago
- Interpretative standards for AMR genotypes☆18Updated this week
- ☆20Updated 10 months ago
- UPHL's Reference Free Pipeline☆26Updated last week
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- Bacterial surveillance pipeline.☆24Updated this week
- Influenza data pipeline to automate genotyping assignment☆33Updated 3 months ago
- ☆17Updated this week
- Functions to manipulate and visualize microbial community data☆12Updated last year
- ☆12Updated 3 years ago
- R package for microbial pangenomics☆23Updated 3 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated this week
- Inferring global and local strict molecular clocks using root-to-tip regression☆13Updated 9 months ago
- Reconstruction of transmission trees using genomic data☆62Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- Discover and annotate the virome☆42Updated last month
- Extract metadata from biosamples in NCBI☆14Updated 4 years ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆36Updated this week
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- ☆17Updated 11 months ago