Alternatives and similar repositories for DENV_pipeline:

Users that are interested in DENV_pipeline are comparing it to the libraries listed below

• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆37Updated 3 weeks ago
• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆26Updated 9 months ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆24Updated last year
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆31Updated 2 months ago
• flu-crew / TreeSort
  Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.
  ☆13Updated last week
• tothuhien / Rlsd2
  An R-wrapper for lsd2
  ☆9Updated last year
• andersen-lab / avian-influenza
  Consensus sequences for U.S. H5N1 clade 2.3.4.4b
  ☆31Updated this week
• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆22Updated last year
• CDCgov / aquascope
  ☆20Updated 3 weeks ago
• noemielefrancq / Phylowave_Learning-fitness-dynamics-pathogens-in-phylogenies
  Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"
  ☆16Updated last week
• emvolz-phylodynamics / treestructure
  ☆17Updated 2 weeks ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆37Updated last week
• sdellicour / seraphim
  R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…
  ☆33Updated 2 weeks ago
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆50Updated 2 years ago
• emvolz-phylodynamics / mlesky
  ☆11Updated 2 months ago
• interpretAMR / AMRrules
  Interpretative standards for AMR genotypes
  ☆18Updated 9 months ago
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆62Updated last year
• tothuhien / lsd-0.3beta
  ☆12Updated 5 years ago
• quick-lab / SARS-CoV-2
  SARs-CoV-2 Primer schemes
  ☆15Updated 2 years ago
• duchene / phylomad
  ☆19Updated 10 months ago
• mrc-ide / skygrowth
  Phylodynamic inference
  ☆18Updated 4 years ago
• SWittouck / tidyamplicons
  Functions to manipulate and visualize microbial community data
  ☆12Updated last year
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆17Updated 2 years ago
• phylogeography / SpreaD3
  Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3
  ☆15Updated last year
• neherlab / treetime_examples
  A collection of documented examples using TreeTime
  ☆21Updated 5 years ago
• nextstrain / avian-flu
  Nextstrain build for avian influenza viruses
  ☆25Updated last month
• DOH-JDJ0303 / bigbacter-nf
  Bacterial surveillance pipeline.
  ☆24Updated 2 weeks ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆22Updated 2 weeks ago
• UPHL-BioNGS / Grandeur
  UPHL's Reference Free Pipeline
  ☆26Updated 2 weeks ago
• Ebedthan / xgt
  Efficient and fast querying and parsing of GTDB's data
  ☆28Updated 3 weeks ago