☆21Apr 2, 2025Updated last year
Alternatives and similar repositories for DENV_pipeline
Users that are interested in DENV_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆14May 23, 2023Updated 3 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- ☆11Dec 20, 2022Updated 3 years ago
- ☆29May 19, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Nov 1, 2022Updated 3 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- ☆16Mar 12, 2026Updated 6 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 3 months ago
- ☆24Jul 25, 2026Updated last month
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆57Jul 24, 2025Updated last year
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated 2 years ago
- Bacterial surveillance pipeline.☆30Updated this week
- ☆13Aug 4, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆14Jan 6, 2023Updated 3 years ago
- UPHL's Reference Free Pipeline☆29Sep 4, 2026Updated 2 weeks ago
- ☆25Jun 25, 2024Updated 2 years ago
- Viral (meta)-genome assembly pipeline.☆23Sep 8, 2026Updated 2 weeks ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆96Jul 23, 2026Updated 2 months ago
- ☆24Sep 3, 2026Updated 3 weeks ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Aug 14, 2025Updated last year
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- TaxTriage is a Nextflow workflow designed to agnostically identify and give confidences of microbial organisms within short- or long-read…☆81Updated this week
- Munge GenBank files into FASTA and tab-separated metadata☆15Feb 5, 2026Updated 7 months ago
- emm Automatic Isolate Labeller☆16Mar 25, 2025Updated last year
- catalog for long-read sequencing tools☆32Feb 14, 2023Updated 3 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆69Updated this week
- Reference-based consensus creation☆61Sep 15, 2026Updated last week
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Apr 24, 2023Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 6 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Sep 12, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 5 months ago
- Software for the Tree-Based Scan Statistic☆17Sep 15, 2026Updated last week
- Bioinformatics Pipeline and Visualization resources☆67Aug 30, 2024Updated 2 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆55Updated this week
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆44Nov 20, 2019Updated 6 years ago
- Datasets for https://github.com/nextstrain/nextclade☆47Sep 15, 2026Updated last week
- Official place for proposals and details around monkeypox virus lineage designations☆23Jul 7, 2026Updated 2 months ago