Alternatives and similar repositories for DENV_pipeline

Users that are interested in DENV_pipeline are comparing it to the libraries listed below

• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆28Updated last year
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆40Updated last week
• andersen-lab / avian-influenza
  Consensus sequences for U.S. H5N1 clade 2.3.4.4b
  ☆36Updated 2 weeks ago
• CDCgov / aquascope
  ☆20Updated 7 months ago
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆65Updated 2 years ago
• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆23Updated last year
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆27Updated 2 months ago
• AMRverse / AMRrules
  Interpretative standards for AMR genotypes
  ☆25Updated 2 weeks ago
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆50Updated 5 months ago
• Neclow / GradME
  Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees
  ☆12Updated 2 years ago
• noemielefrancq / Phylowave_Learning-fitness-dynamics-pathogens-in-phylogenies
  Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"
  ☆21Updated 6 months ago
• emvolz-phylodynamics / mlesky
  ☆11Updated 9 months ago
• securebio / nao-mgs-workflow
  ☆15Updated last week
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆37Updated last month
• larssnip / micropan
  R package for microbial pangenomics
  ☆24Updated 3 years ago
• DOH-JDJ0303 / vaper
  Viral (meta)-genome assembly pipeline.
  ☆17Updated last week
• emvolz-phylodynamics / treestructure
  ☆18Updated last month
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆21Updated last year
• lonelyjoeparker / befi-bats-gui
  Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
  ☆12Updated 8 years ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆40Updated last month
• tgvaughan / MASTER
  A versatile simulation engine for stochastic population dynamics models.
  ☆23Updated 3 years ago
• mikemc / metacal
  Metagenomics calibration R package
  ☆20Updated 3 years ago
• lenaschimmel / sc2rf
  SARS-Cov-2 Recombinant Finder for fasta sequences
  ☆50Updated 3 years ago
• quevan / phlame
  ☆13Updated 3 months ago
• statdivlab / paramedic
  Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
  ☆14Updated last year
• ukhsa-collaboration / variant_definitions
  ☆74Updated last year
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆18Updated 2 years ago
• cov-lineages / pangolin-data
  Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
  ☆32Updated last week
• gtonkinhill / rhierbaps
  rhierbaps: R implementation of hierBAPS
  ☆35Updated 4 years ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆50Updated 3 years ago