grubaughlab / DENV_pipeline
☆16Updated 2 weeks ago
Alternatives and similar repositories for DENV_pipeline:
Users that are interested in DENV_pipeline are comparing it to the libraries listed below
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆33Updated this week
- Estimating time trees from very large phylogenies☆26Updated 8 months ago
- Influenza data pipeline to automate genotyping assignment☆29Updated last month
- ☆20Updated last month
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆16Updated last week
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- ☆17Updated last month
- ☆11Updated last month
- Utility to alias and dealias pango lineages☆22Updated last year
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆12Updated last month
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated 3 months ago
- An R-wrapper for lsd2☆9Updated last year
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆30Updated this week
- Bacterial surveillance pipeline.☆24Updated last month
- Interpretative standards for AMR genotypes☆18Updated 8 months ago
- ☆19Updated 9 months ago
- ☆21Updated 9 months ago
- UPHL's Reference Free Pipeline☆26Updated 3 weeks ago
- Reconstruction of transmission trees using genomic data☆62Updated last year
- Phylodynamic inference☆18Updated 4 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆11Updated 8 months ago
- R package for microbial pangenomics☆23Updated 2 years ago
- ☆12Updated 5 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- A set of scripts for calculating pairwise SNP distance☆39Updated 2 years ago
- Calculate assocations between genes and traits☆23Updated 3 weeks ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆61Updated 2 years ago
- ☆17Updated 9 months ago