grubaughlab / DENV_pipelineLinks
☆16Updated 2 months ago
Alternatives and similar repositories for DENV_pipeline
Users that are interested in DENV_pipeline are comparing it to the libraries listed below
Sorting:
- Influenza data pipeline to automate genotyping assignment☆33Updated this week
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆38Updated 3 weeks ago
- Estimating time trees from very large phylogenies☆26Updated 10 months ago
- Interpretative standards for AMR genotypes☆21Updated this week
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆18Updated last month
- Utility to alias and dealias pango lineages☆22Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- Scalable relaxed clock phylogenetic dating☆25Updated last year
- ☆20Updated 2 months ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆15Updated last month
- Bacterial surveillance pipeline.☆24Updated 3 weeks ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆31Updated this week
- UPHL's Reference Free Pipeline☆26Updated 3 weeks ago
- An R-wrapper for lsd2☆9Updated 2 years ago
- ☆11Updated 3 months ago
- SARs-CoV-2 Primer schemes☆16Updated 3 weeks ago
- R package for microbial pangenomics☆23Updated 3 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆34Updated 2 months ago
- ☆36Updated last month
- ☆17Updated this week
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated 3 weeks ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Genome size estimation from long read overlaps☆56Updated last month
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆39Updated this week
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- ☆18Updated last week
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- Reconstruction of transmission trees using genomic data☆62Updated last year
- REcombination BARcode detector.☆13Updated last year