ktmeaton / NCBImeta
Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).
☆48Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for NCBImeta
- Recombination-free trees☆56Updated last year
- Split Kmer Analysis☆63Updated 2 years ago
- Predict plasmids from uncorrected long read data☆39Updated 4 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆26Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆46Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆52Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- IslandPath standalone software☆31Updated last year
- Fast and space-efficient taxonomic classification of long reads☆42Updated last week
- Gene-flank analysis tool☆26Updated 6 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Precise host read removal☆78Updated 2 weeks ago
- ☆51Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆50Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated last week
- Strain Resolution ON Graphs☆46Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 2 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆36Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆51Updated 2 months ago
- IS mapping software☆51Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- Visualize whole genome alignments as linear maps☆70Updated last month
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago