ktmeaton / NCBImetaLinks
Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).
☆48Updated 3 years ago
Alternatives and similar repositories for NCBImeta
Users that are interested in NCBImeta are comparing it to the libraries listed below
Sorting:
- Split Kmer Analysis☆65Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 11 months ago
- Recombination-free trees☆58Updated 2 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆36Updated 6 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- Gene-flank analysis tool☆27Updated 5 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 7 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Bacterial GWAS analysis☆40Updated last week
- Colinear block visualisation tool☆31Updated last year
- IslandPath standalone software☆32Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies