Pandas-based Data Handler for VCF, BED, and SAM Files
☆32Oct 22, 2021Updated 4 years ago
Alternatives and similar repositories for pdbio
Users that are interested in pdbio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Jan 16, 2018Updated 8 years ago
- Using Biopython's Bio.Entrez package to Access NCBI Entrez databases☆16Jun 26, 2014Updated 12 years ago
- A Nextflow workflow for HLA typing using HLA-HD☆15Jul 3, 2024Updated last year
- Client-side REST access to KEGG☆15Jun 16, 2026Updated 2 weeks ago
- ☆12Feb 6, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Sep 7, 2023Updated 2 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28May 14, 2025Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- ☆18Mar 21, 2023Updated 3 years ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 10 months ago
- Munge GenBank files into FASTA and tab-separated metadata☆15Feb 5, 2026Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Cubic spline interpolation library☆20Jun 19, 2013Updated 13 years ago
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 4 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 4 years ago
- ☆10Dec 29, 2021Updated 4 years ago
- 💡 A catalogue and categorization of open-source, Python-based energy models.☆34May 10, 2025Updated last year
- Gene expression viewer template☆12Aug 30, 2017Updated 8 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆15Jun 10, 2026Updated 3 weeks ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Apr 10, 2026Updated 2 months ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆23Jan 27, 2022Updated 4 years ago
- AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions☆12Feb 10, 2023Updated 3 years ago
- RNA-Seq workflow for Kids-First DRC☆12May 12, 2026Updated last month
- Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.381…☆15May 26, 2014Updated 12 years ago
- ☆11Oct 19, 2021Updated 4 years ago
- ☆10Jan 8, 2018Updated 8 years ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated 2 years ago
- Faster multispecies coalescent inference using multilocus data☆15Aug 13, 2023Updated 2 years ago
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Arioc: GPU-accelerated DNA short-read alignment☆70May 20, 2025Updated last year
- ☆18May 28, 2016Updated 10 years ago
- ☆29Sep 28, 2021Updated 4 years ago
- TIDDIT - structural variant calling☆80Mar 22, 2026Updated 3 months ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- Visual exploration of large genome interaction matrices with interactive small multiples.☆13Dec 1, 2021Updated 4 years ago
- A Biostatistical tool for Transcriptomics Analysis☆22Feb 19, 2022Updated 4 years ago