dceoy / pdbio
Pandas-based Data Handler for VCF, BED, and SAM Files
☆32Updated 3 years ago
Alternatives and similar repositories for pdbio:
Users that are interested in pdbio are comparing it to the libraries listed below
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆78Updated 3 months ago
- ☆36Updated 6 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆62Updated this week
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- TIDDIT - structural variant calling☆74Updated last week
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆45Updated 2 years ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆45Updated 2 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆74Updated 8 months ago
- BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data☆25Updated 3 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆49Updated 3 weeks ago
- ☆23Updated 6 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 5 months ago
- for visual evaluation of read support for structural variation☆52Updated 9 months ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 10 months ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 4 years ago
- Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes☆62Updated last month
- VEP Plugin to annotate high-impact five prime UTR variants☆26Updated 7 months ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 3 months ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆86Updated last week
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 2 weeks ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago