dceoy / pdbio
Pandas-based Data Handler for VCF, BED, and SAM Files
☆32Updated 3 years ago
Alternatives and similar repositories for pdbio:
Users that are interested in pdbio are comparing it to the libraries listed below
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 5 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 5 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- small rna-seq analysis package☆30Updated 2 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- gatk4 RNA variant calling pipeline☆47Updated last week
- TIDDIT - structural variant calling☆73Updated last month
- Generic human DNA variant annotation pipeline☆58Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆28Updated this week
- ☆23Updated 6 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆69Updated this week
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- for visual evaluation of read support for structural variation☆52Updated 11 months ago
- Clinical interpretation of somatic mutations in cancer☆45Updated 2 months ago
- A python package and a set of shell commands to handle GTF files☆48Updated 10 months ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated last year
- The Zavolab Automated RNA-seq Pipeline☆35Updated this week
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆49Updated 4 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated 11 months ago
- Galaxy RNA workbench☆40Updated 4 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 5 years ago
- Analysis pipeline for the GUIDE-seq assay.☆24Updated last week
- ☆38Updated 7 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆60Updated last week