mrborges23 / delta_statistic
Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categorical trait and a phylogeny.
☆25Updated 3 years ago
Alternatives and similar repositories for delta_statistic:
Users that are interested in delta_statistic are comparing it to the libraries listed below
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 7 months ago
- Phylogenetic ANalyses of DiversificAtion☆24Updated last month
- Exploring the Phylogenetic Signal in Continuous Traits☆16Updated last year
- babette is an R package to work with BEAST2☆44Updated this week
- R Interfaces to Phylogenetic Software☆11Updated this week
- Phylogenetic penalized likelihood☆47Updated 6 months ago
- initial commit☆26Updated 2 years ago
- BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts☆63Updated 4 months ago
- Machuruku☆31Updated last month
- Species occurrence dot maps in R☆21Updated 2 years ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated last year
- Python version of PHLAWD☆21Updated 3 months ago
- A textbook for phylogenetic comparative methods.☆43Updated 5 years ago
- Informatic Sequence Classification Trees☆14Updated 3 years ago
- A program for multimodel inference on speciation and trait evolution☆33Updated 7 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆19Updated 5 years ago
- the hierfstat package☆25Updated 3 months ago
- This repo contains tutorials and data for the workshop on phylogenetic methods being delivered at the 2019 Evolution conference in Provid…☆13Updated 5 years ago
- Links for Ecology and Evolution☆22Updated 5 years ago
- Software for the Analysis of Phylogenetic Community Structure and Character Evolution, with Phylomatic☆42Updated 2 years ago
- strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.☆25Updated 9 months ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆68Updated 9 months ago
- Examples of application of comparative methods in R☆57Updated 2 years ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆23Updated 7 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆14Updated last year
- rtrees: an R package to assemble phylogenetic trees from mega-trees☆32Updated 8 months ago
- Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treat…☆12Updated this week
- A book for teaching people how to do comparative methods in R☆20Updated last year
- A Landscape Genomic Analysis Toolkit in R☆15Updated 3 weeks ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago