mrborges23 / delta_statistic
Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categorical trait and a phylogeny.
☆24Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for delta_statistic
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated 4 months ago
- Exploring the Phylogenetic Signal in Continuous Traits☆16Updated last year
- babette is an R package to work with BEAST2☆44Updated 4 months ago
- Species occurrence dot maps in R☆18Updated 2 years ago
- R Interfaces to Phylogenetic Software☆11Updated 7 months ago
- initial commit☆26Updated last year
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆23Updated 4 months ago
- ☆32Updated 3 weeks ago
- method for modeling continuous and discrete population genetic structure☆35Updated 10 months ago
- the hierfstat package☆24Updated this week
- A textbook for phylogenetic comparative methods.☆42Updated 5 years ago
- Phylogenetic ANalyses of DiversificAtion☆24Updated 4 months ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆68Updated 6 months ago
- A program for multimodel inference on speciation and trait evolution☆33Updated 7 years ago
- Machuruku☆30Updated 5 months ago
- BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts☆58Updated last month
- Phylogenetic penalized likelihood☆46Updated 4 months ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆18Updated 5 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆39Updated 2 months ago
- Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treat…☆11Updated last week
- Links for Ecology and Evolution☆22Updated 5 years ago
- Performs MCMCglmm on multiple phylogenetic trees☆12Updated 9 months ago
- A suite of methods and models for studying evolutionary radiations☆22Updated last year
- Software for the Analysis of Phylogenetic Community Structure and Character Evolution, with Phylomatic☆42Updated last year
- Importing and Analysing DArT type snp and silicodart data☆31Updated 2 months ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆17Updated 9 months ago
- Informatic Sequence Classification Trees☆14Updated 3 years ago
- R package to run BEAST2☆11Updated 3 weeks ago
- This repo contains tutorials and data for the workshop on phylogenetic methods being delivered at the 2019 Evolution conference in Provid…☆13Updated 5 years ago
- Detection of evolutionary shifts in Ornstein-Uhlenbeck models☆19Updated 2 years ago