schnitzer-lab / ActSort-publicLinks
ActSort is an active learning accelerated cell sorter tool for calcium imaging.
☆24Updated last week
Alternatives and similar repositories for ActSort-public
Users that are interested in ActSort-public are comparing it to the libraries listed below
Sorting:
- Registration of cells across sessions.☆75Updated last year
- Calcium imaging inter-session alignment☆13Updated last week
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆80Updated 10 months ago
- NEural MOdelS, a statistical modeling framework for neuroscience.☆107Updated this week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆77Updated 6 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆152Updated this week
- A Matlab interface for reading and writing NWB files☆55Updated last week
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 8 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆135Updated 3 months ago
- This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Ti…☆15Updated last year
- A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.☆15Updated 7 years ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆68Updated this week
- ☆59Updated 3 years ago
- A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA☆39Updated 2 years ago
- a visualization method for neural data☆238Updated 6 months ago
- Region Of Interest Classification and Tracking☆26Updated this week
- State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data☆50Updated 3 weeks ago
- Algorithm for automated source extraction from 1P data☆22Updated 2 years ago
- Tutorials for using SpikeInterface on extracellular datasets.☆67Updated last year
- A curated list of awesome Neuropixels resources.☆114Updated last month
- ☆52Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆177Updated 2 months ago
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆27Updated last week
- Tools to work with Allen Inst CCF data in matlab☆142Updated 3 months ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)