angelolab / Nimbus-InferenceLinks
☆17Updated last month
Alternatives and similar repositories for Nimbus-Inference
Users that are interested in Nimbus-Inference are comparing it to the libraries listed below
Sorting:
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆20Updated 3 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆32Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆36Updated this week
- ☆54Updated this week
- ☆63Updated 2 weeks ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆17Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated 3 weeks ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated 3 weeks ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆29Updated last month
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆26Updated last month
- Spatial Single-Cell Analysis Toolkit☆92Updated 2 weeks ago
- ☆27Updated 9 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- ☆27Updated 9 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 5 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆28Updated last week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 9 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated last week
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆36Updated 7 months ago
- Static plotting for spatialdata☆62Updated this week
- Python API and Jupyter widget for Vitessce☆49Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆81Updated last year
- Framework for image and flow cytometry analysis☆27Updated 2 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆72Updated last month
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆21Updated 3 months ago
- ☆36Updated last year
- Multi-modal single cell analysis pipelines☆59Updated last week
- Integrated pipeline for multiplexed image analysis☆91Updated 3 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆51Updated this week
- ☆18Updated last week