angelolab / Nimbus-InferenceLinks
☆30Updated last month
Alternatives and similar repositories for Nimbus-Inference
Users that are interested in Nimbus-Inference are comparing it to the libraries listed below
Sorting:
- Single-cell spatial proteomics analysis that makes you happy!☆43Updated last week
- ☆39Updated last year
- ☆75Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆100Updated this week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆61Updated 2 weeks ago
- Spatial Single-Cell Analysis Toolkit☆103Updated 4 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated 2 weeks ago
- ☆62Updated last week
- Integrated pipeline for multiplexed image analysis☆99Updated 7 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆22Updated 7 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 4 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆91Updated last year
- comseg☆24Updated 9 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- ☆27Updated last year
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆11Updated 2 years ago
- A pipeline to transform images into valuable analysis items☆15Updated 4 months ago
- ☆51Updated 4 months ago
- Segmentation error aware clustering for multiplexed imaging☆19Updated 10 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- ☆35Updated last week
- ☆70Updated 2 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- A toolkit for processing multiplexed tissue images☆65Updated this week
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆30Updated 3 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆45Updated last week
- Static plotting for spatialdata☆68Updated this week