☆45Jun 3, 2026Updated 4 months ago
Alternatives and similar repositories for Nimbus-Inference
Users that are interested in Nimbus-Inference are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆37Oct 10, 2025Updated last year
- Generate a spatial catalogue from multiplexed imaging data☆19Jun 12, 2025Updated last year
- ☆38Dec 13, 2023Updated 2 years ago
- Integrated pipeline for multiplexed image analysis☆110Sep 18, 2026Updated last month
- Reproducibility notebooks for resolVI manuscript☆14Apr 17, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆71May 31, 2026Updated 4 months ago
- Nextflow version of Sopa - spatial omics pipeline and analysis☆22Oct 20, 2026Updated last week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆296Oct 23, 2026Updated last week
- Public landing page and releases for CellTune.☆12Jul 13, 2026Updated 3 months ago
- Training/Evaluation code for HoVer-NeXt☆19Aug 26, 2026Updated 2 months ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 7 months ago
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆17Oct 19, 2026Updated last week
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- Deciphering spatial ecotypes from spatial, single-cell, and bulk transcriptomic data☆54Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆20Sep 17, 2026Updated last month
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆117Jul 4, 2025Updated last year
- InstanSeg is a pytorch-based cell and nucleus segmentation pipeline for fluorescence and brightfield microscopy images.☆249Sep 29, 2026Updated last month
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Oct 15, 2026Updated 2 weeks ago
- ☆63Jan 9, 2026Updated 9 months ago
- Segmentation error aware clustering for multiplexed imaging☆19Jan 9, 2025Updated last year
- Differential spatial enrichment across conditions☆31Jul 14, 2026Updated 3 months ago
- ☆20Sep 19, 2025Updated last year
- VitaminP: a vision transformer-assisted multimodal integration network for pathology cell segmentation☆13Oct 14, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Sep 11, 2026Updated last month
- Piecewise alignment for layers of mosaics☆66Oct 17, 2026Updated last week
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆203Updated this week
- ☆57Sep 2, 2026Updated last month
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Sep 30, 2026Updated last month
- Single-cell spatial omics analysis that makes you happy!☆79Updated this week
- Flexible, probablistic metrics for quality control of scRNA-seq data☆23May 27, 2026Updated 5 months ago
- Deep Learning Library for Spot Detection☆24Jun 4, 2026Updated 4 months ago
- ☆16Apr 4, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆18Mar 18, 2025Updated last year
- scVIVA-Tools: A unified toolkit for spatial transcriptomics analysis☆15Oct 21, 2026Updated last week
- ☆19Apr 5, 2024Updated 2 years ago
- AESTETIK: Convolutional autoencoder for learning spot representations from spatial transcriptomics and morphology data☆28Aug 18, 2026Updated 2 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- ViT architecture with Mamba instead of transformer backbone☆17Dec 8, 2023Updated 2 years ago
- A GPU-accelerated web application for visualization, annotation and sharing of spatial biology data☆14Updated this week