angelolab / Nimbus-InferenceLinks
☆18Updated 4 months ago
Alternatives and similar repositories for Nimbus-Inference
Users that are interested in Nimbus-Inference are comparing it to the libraries listed below
Sorting:
- Single-cell spatial proteomics analysis that makes you happy!☆39Updated last week
- ☆58Updated last week
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆17Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated last month
- ☆39Updated last year
- ☆71Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 2 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 2 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆21Updated 5 months ago
- Spatial Single-Cell Analysis Toolkit☆100Updated 2 months ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆36Updated 10 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- ☆27Updated 11 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆43Updated 3 weeks ago
- ☆49Updated 2 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated 3 weeks ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆53Updated 3 weeks ago
- comseg☆24Updated 7 months ago
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago
- Learning cell communication from spatial graphs of cells☆112Updated last year
- Python API and Jupyter widget for Vitessce☆55Updated last week
- Static plotting for spatialdata☆65Updated this week
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆27Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 weeks ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆67Updated last year
- ☆29Updated last year
- Multi-modal single cell analysis pipelines☆58Updated 2 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last week
- Integrated pipeline for multiplexed image analysis☆97Updated 5 months ago
- ☆35Updated 2 months ago