joonkeekim / mediar-napariLinks
☆20Updated last year
Alternatives and similar repositories for mediar-napari
Users that are interested in mediar-napari are comparing it to the libraries listed below
Sorting:
- ☆34Updated last year
- QuPath extension for Cellsparse☆19Updated 6 months ago
- Piecewise alignment for layers of mosaics☆29Updated 2 months ago
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- The official QuPath extension for InstanSeg☆28Updated 3 weeks ago
- A collection of resources on bioimage analysis and related tools and techniques☆14Updated 2 years ago
- computer vision models for single-cell phenotyping☆76Updated this week
- Framework for image and flow cytometry analysis☆31Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago
- Interactive visualization of spatial omics data☆70Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆59Updated last year
- Cloud-based data annotation tools for biological images☆82Updated last year
- ☆87Updated this week
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- StarDist plugin for napari☆39Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆32Updated 4 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 2 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- Raw format to OME-TIFF converter☆56Updated last month
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆13Updated 6 months ago
- Accurate and efficient spot detection for microscopy data☆105Updated 3 weeks ago
- Microsopic Image Analyzer (MIA)☆28Updated 2 months ago
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆127Updated 3 months ago
- Interactive visualization and sharing of cell tracking data in the browser☆40Updated 2 weeks ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆22Updated last week
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- Image registration (alignment) software for large microscopy images☆26Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆64Updated 5 months ago