Alternatives and similar repositories for mediar-napari:

Users that are interested in mediar-napari are comparing it to the libraries listed below

• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆18Updated this week
• huangch / qust
  QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
  ☆25Updated last week
• KerenLab / CellSighter
  ☆32Updated last year
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆27Updated 9 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆30Updated 3 months ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆24Updated 3 weeks ago
• qupath / qubalab
  Lab for quantitative bioimage analysis experiments in Python
  ☆13Updated 3 months ago
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆16Updated last week
• saramcardle / FS2K
  Files associated with the From Samples To Knowledge 2025 QuPath training course
  ☆12Updated 3 weeks ago
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆25Updated 3 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 6 months ago
• MarkZaidi / Universal-StarDist-for-QuPath
  Transfer trained StarDist models across imaging modalities
  ☆3Updated 7 months ago
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated last week
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆23Updated 3 weeks ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆51Updated 2 months ago
• cytomining / copairs
  Find profile pairs and compute metrics between them.
  ☆12Updated last month
• schienstockd / cecelia
  Framework for image and flow cytometry analysis
  ☆25Updated 2 weeks ago
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆29Updated 2 years ago
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆16Updated 2 years ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆68Updated 7 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 8 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 7 months ago
• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆27Updated last month
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆44Updated 2 weeks ago
• Michael-shannon / cellPLATO
  The 2023 version of cellPLATO
  ☆14Updated 5 months ago
• clij / clupath
  GPU-accelerated image processing in QuPath
  ☆15Updated 3 years ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆79Updated last year
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆13Updated 2 years ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 9 months ago