☆21Apr 1, 2024Updated last year
Alternatives and similar repositories for mediar-napari
Users that are interested in mediar-napari are comparing it to the libraries listed below
Sorting:
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 3 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …☆157Apr 1, 2024Updated last year
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Updated this week
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆63Oct 27, 2024Updated last year
- Repo for a workshops and presentations about ROS2 and Python☆12Mar 14, 2025Updated 11 months ago
- A self-supervised denoising algorithm.☆28Apr 6, 2024Updated last year
- A napari plugin for counting organoids from brightfield microscopy images with deep learning☆14Feb 26, 2026Updated last week
- ☆12Feb 23, 2026Updated 2 weeks ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆12Apr 24, 2024Updated last year
- Framework for image and flow cytometry analysis☆32Jan 3, 2026Updated 2 months ago
- Command-line client for Fractal☆48Updated this week
- ☆15Jan 20, 2026Updated last month
- dask empowered fast4dreg☆15Feb 20, 2026Updated 2 weeks ago
- ☆14Jan 26, 2021Updated 5 years ago
- Interacting Active Surfaces☆10Jul 12, 2022Updated 3 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- ☆13Nov 24, 2025Updated 3 months ago
- A collection of resources on bioimage analysis and related tools and techniques☆14Apr 28, 2023Updated 2 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Nov 10, 2022Updated 3 years ago
- ☆15Jul 29, 2022Updated 3 years ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆26Feb 3, 2026Updated last month
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 7 months ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated 10 months ago
- StarDist plugin for napari☆38Aug 24, 2024Updated last year
- Guides and code snippets for integrating external devices with Opentrons☆29Aug 30, 2023Updated 2 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 6 months ago
- Linking napari layers with Matplotlib plots☆43Mar 1, 2026Updated last week
- a tool for using surfaces to explore volumetric data in napari☆19Feb 25, 2026Updated last week
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- A napari plugin for clustering objects according to their properties.☆90Updated this week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆29Updated this week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 3 weeks ago
- ☆52May 1, 2025Updated 10 months ago
- Accurate and efficient spot detection for microscopy data☆117Feb 5, 2026Updated last month