Kapoorlabs-CAPED / vollseg-napari
Napari plugin for vollseg
☆13Updated 8 months ago
Alternatives and similar repositories for vollseg-napari:
Users that are interested in vollseg-napari are comparing it to the libraries listed below
- ☆22Updated 5 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 2 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 2 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 4 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- Visualizing feature measurements on label images in napari☆10Updated 6 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- ☆21Updated last year
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- ☆15Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆54Updated 2 years ago
- ☆13Updated 4 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month
- Process and analyze surfaces using vedo in napari.☆24Updated 9 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- ☆10Updated 6 months ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆28Updated 3 weeks ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 3 months ago
- ☆17Updated 2 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆20Updated last month
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 8 months ago
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- Browse your OMERO database from within napari.☆35Updated last week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆22Updated 2 months ago