True-North-Intelligent-Algorithms / notebooks-and-napari-widgets-for-dlLinks
A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
☆16Updated 4 months ago
Alternatives and similar repositories for notebooks-and-napari-widgets-for-dl
Users that are interested in notebooks-and-napari-widgets-for-dl are comparing it to the libraries listed below
Sorting:
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last month
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- ☆15Updated last month
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 11 months ago
- ☆11Updated this week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- ☆12Updated last month
- dask empowered fast4dreg☆11Updated 9 months ago
- Course on Deep Learning for imaging using PyTorch☆13Updated 3 years ago
- ☆51Updated 3 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 4 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 9 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated 2 weeks ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆18Updated last week
- A napari plugin to analysis point spread functions.☆13Updated 5 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆37Updated 4 months ago
- Browse your OMERO database from within napari.☆38Updated 3 weeks ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- ☆14Updated last week
- Spotiflow plugin for napari☆12Updated 2 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- ☆19Updated 3 weeks ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated 2 years ago