A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
☆19Dec 9, 2025Updated 2 months ago
Alternatives and similar repositories for notebooks-and-napari-widgets-for-dl
Users that are interested in notebooks-and-napari-widgets-for-dl are comparing it to the libraries listed below
Sorting:
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Updated this week
- A napari plugin to view and edit layer metadata☆13Updated this week
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it al…☆18Feb 25, 2026Updated last week
- A fully scalable robust image feature extraction library.☆28Feb 14, 2026Updated 3 weeks ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated 2 weeks ago
- Accurate and efficient spot detection for microscopy data☆117Feb 5, 2026Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Oct 22, 2025Updated 4 months ago
- Segment images utilizing pre-trained neural networks as feature extractors☆47Feb 25, 2026Updated last week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 3 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated this week
- napari widgets for start-to-finish batch processing☆15Mar 1, 2026Updated last week
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Sep 28, 2023Updated 2 years ago
- Spotiflow plugin for napari☆15Feb 2, 2026Updated last month
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 6 months ago
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆106Feb 11, 2026Updated 3 weeks ago
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- ☆15Updated this week
- dask empowered fast4dreg☆15Feb 20, 2026Updated 2 weeks ago
- ☆15Jan 20, 2026Updated last month
- ☆23Oct 22, 2024Updated last year
- Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at th…☆16Jun 27, 2025Updated 8 months ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- A napari plugin to analysis point spread functions.☆12Mar 28, 2025Updated 11 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 2 months ago
- Scientific Dataset Quality Control and Data Exploration Tool