A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
☆19Dec 9, 2025Updated 8 months ago
Alternatives and similar repositories for notebooks-and-napari-widgets-for-dl
Users that are interested in notebooks-and-napari-widgets-for-dl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated last month
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Aug 31, 2026Updated last week
- Interprocess environment manager 🧊☆17May 11, 2026Updated 3 months ago
- A napari plugin to view and edit layer metadata☆13Updated this week
- A fully scalable robust image feature extraction library.☆29Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆22Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆22Aug 27, 2026Updated last week
- dask empowered fast4dreg☆17Mar 11, 2026Updated 5 months ago
- ☆16Updated this week
- Lab for quantitative bioimage analysis experiments in Python☆21Feb 16, 2026Updated 6 months ago
- Segment images utilizing pre-trained neural networks as feature extractors☆52Jul 3, 2026Updated 2 months ago
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 3 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Jun 16, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Sep 28, 2023Updated 2 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated this week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 9 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 9 months ago
- CNN for segmenting vasculature☆19Apr 9, 2026Updated 4 months ago
- Use ImageJ functionality from napari☆34Jun 17, 2026Updated 2 months ago
- Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at th…☆15Jun 27, 2025Updated last year
- ☆25Oct 22, 2024Updated last year
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Spotiflow plugin for napari☆19May 19, 2026Updated 3 months ago
- Accurate and efficient spot detection for microscopy data☆141Jun 8, 2026Updated 2 months ago
- An introduction to OME-Zarr for big bioimaging data☆28Updated this week
- Denoising via adaptive binning.☆14Aug 28, 2026Updated last week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Updated this week
- ☆27Updated this week
- ilastik plugin for napari☆15Mar 2, 2026Updated 6 months ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 4 years ago
- A napari plugin to analysis point spread functions.☆11Apr 27, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆15Jul 29, 2022Updated 4 years ago
- A recast of cell segmentation models built on the Burn deep learning framework.☆23Aug 14, 2026Updated 3 weeks ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- ☆15Apr 1, 2026Updated 5 months ago
- ☆11May 6, 2024Updated 2 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆31Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 9 months ago