moshi4 / pybarrnapLinks
Python implementation of barrnap (Bacterial ribosomal RNA predictor)
☆22Updated 9 months ago
Alternatives and similar repositories for pybarrnap
Users that are interested in pybarrnap are comparing it to the libraries listed below
Sorting:
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆32Updated 2 weeks ago
- Genome size estimation from long read overlaps☆62Updated last month
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆14Updated last month
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- a python package for finding tandem repeats from genomic sequences☆29Updated 7 months ago
- ☆24Updated 9 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 2 years ago
- Genomic sequence aligner☆31Updated last week
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 10 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- software to identify primers that can distinguish genomes☆20Updated 9 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆100Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆43Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated 2 weeks ago
- Basecalling configuration prediction through FASTQ files☆31Updated 5 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated 3 months ago
- UPHL's Reference Free Pipeline☆27Updated 3 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Updated last month
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆15Updated 10 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆26Updated 3 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 6 months ago