moshi4 / pybarrnapLinks
Python implementation of barrnap (Bacterial ribosomal RNA predictor)
☆22Updated 9 months ago
Alternatives and similar repositories for pybarrnap
Users that are interested in pybarrnap are comparing it to the libraries listed below
Sorting:
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆14Updated 2 months ago
- a python package for finding tandem repeats from genomic sequences☆29Updated 8 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆26Updated 3 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆33Updated this week
- Microbial agile accurate SNP Typer☆29Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 months ago
- ☆24Updated 9 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆104Updated 2 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- Manipulate and generate figures for trees in Newick format☆22Updated 3 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆56Updated 7 months ago
- Genome size estimation from long read overlaps☆72Updated last week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆26Updated last week
- ☆28Updated last year
- ☆10Updated 5 months ago
- Genomic sequence aligner☆33Updated last month
- ☆40Updated 3 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆44Updated 2 months ago
- Basecalling configuration prediction through FASTQ files☆31Updated 6 months ago
- Better Alignments with Translated HMMER☆23Updated last month
- software to identify primers that can distinguish genomes☆20Updated 3 weeks ago
- sunburst plots for taxonomy - working to update Krona☆41Updated last month
- ☆52Updated 6 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated last week
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Updated last week
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated 2 weeks ago