moshi4 / pybarrnapLinks
Python implementation of barrnap (Bacterial ribosomal RNA predictor)
☆21Updated 6 months ago
Alternatives and similar repositories for pybarrnap
Users that are interested in pybarrnap are comparing it to the libraries listed below
Sorting:
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 2 weeks ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆23Updated 2 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆46Updated last week
- A new high-resolution long-read metagenome assembler for even noisy reads☆76Updated 2 weeks ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 months ago
- Genome size estimation from long read overlaps☆59Updated 2 weeks ago
- Computation of average nucleotide identity with the use of MMseqs2☆13Updated 7 months ago
- ☆24Updated 6 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 2 weeks ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆12Updated 2 weeks ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆36Updated 4 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆18Updated 7 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated 2 weeks ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆37Updated 4 months ago
- Microbial agile accurate SNP Typer☆30Updated last year
- Manipulate and generate figures for trees in Newick format☆22Updated last week
- Drug Resistance Prediction with Reference Graphs☆22Updated 2 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆27Updated 2 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆12Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated last week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆40Updated 2 weeks ago
- software to identify primers that can distinguish genomes☆21Updated 6 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated last week
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 2 months ago