moshi4 / pybarrnapLinks
Python implementation of barrnap (Bacterial ribosomal RNA predictor)
☆22Updated 7 months ago
Alternatives and similar repositories for pybarrnap
Users that are interested in pybarrnap are comparing it to the libraries listed below
Sorting:
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆14Updated 2 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 5 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆42Updated 3 weeks ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 2 weeks ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆26Updated 3 weeks ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆24Updated last month
- Genome size estimation from long read overlaps☆60Updated 2 weeks ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆29Updated 3 weeks ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆34Updated 2 months ago
- Manipulate and generate figures for trees in Newick format☆22Updated last month
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆30Updated last month
- a python package for finding tandem repeats from genomic sequences☆29Updated 6 months ago
- ☆24Updated 7 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆39Updated last month
- Computation of average nucleotide identity with the use of MMseqs2☆15Updated 9 months ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated last week
- A new high-resolution long-read metagenome assembler for even noisy reads☆93Updated 3 weeks ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆58Updated last year
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆16Updated last week
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated 9 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Colinear block visualisation tool☆31Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 9 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 11 months ago
- snapper☆13Updated last year
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Updated this week