moshi4 / pybarrnapLinks
Python implementation of barrnap (Bacterial ribosomal RNA predictor)
☆24Updated last year
Alternatives and similar repositories for pybarrnap
Users that are interested in pybarrnap are comparing it to the libraries listed below
Sorting:
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Updated 3 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆16Updated 2 weeks ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆28Updated 5 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 5 months ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆37Updated last week
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆34Updated 6 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆45Updated last week
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 3 weeks ago
- Genome size estimation from long read overlaps☆80Updated last month
- a python package for finding tandem repeats from genomic sequences☆29Updated 10 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15Updated 8 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆15Updated last year
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆27Updated 6 months ago
- snapper☆13Updated last year
- Colinear block visualisation tool☆31Updated 2 years ago
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 5 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated last week
- ☆15Updated 8 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated 11 months ago
- software to identify primers that can distinguish genomes☆20Updated last week
- Plasmid analysis using rearrangement distances☆49Updated last week
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆43Updated 5 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆40Updated 4 months ago