Alternatives and similar repositories for HiCHap_master:

Users that are interested in HiCHap_master are comparing it to the libraries listed below

• Zhong-Lab-UCSD / HiCtool
  Python library for processing and visualizing Hi-C data
  ☆20Updated 4 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆49Updated 8 months ago
• Uauy-Lab / WheatHomoeologExpression
  ☆15Updated 4 years ago
• epi2me-labs / wf-pore-c
  ☆39Updated 2 months ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆42Updated 2 years ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆47Updated 2 years ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 3 months ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 4 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• ma-compbio / Phylo-HMRF
  ☆16Updated 4 years ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆24Updated 9 months ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆31Updated 3 years ago
• BGI-shenzhen / BamDeal
  BamDeal: a comprehensive toolkit for bam manipulation
  ☆53Updated 2 years ago
• 4ureliek / TEanalysis
  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
  ☆26Updated 5 years ago
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 4 years ago
• XiaoTaoWang / NeoLoopFinder
  A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
  ☆64Updated last year
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated last month
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆32Updated 6 months ago
• vaquerizaslab / tadtool
  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
  ☆44Updated 2 years ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated 2 years ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated 7 months ago
• Linhua-Sun / Ath_Heat_Hi-C
  Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis
  ☆7Updated 5 years ago
• ChenFengling / HiCpipe
  an efficient Hi-C data processing pipeline
  ☆16Updated last year
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆24Updated 2 years ago
• LappalainenLab / lorals_paper_code
  ☆23Updated 2 years ago
• fansalon / TEspeX
  TEspeX - pipeline for Transposable Elements expression quantification
  ☆20Updated last year
• zhongmicai / Hic_tools_collection
  ☆11Updated 5 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• stat-lab / MOPline
  Detection and genotyping of structural variants
  ☆18Updated last week