Advanced steps of the OSCA book
☆14Nov 19, 2025Updated 3 months ago
Alternatives and similar repositories for OSCA.advanced
Users that are interested in OSCA.advanced are comparing it to the libraries listed below
Sorting:
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- PepQuery: a targeted peptide search engine☆15May 1, 2024Updated last year
- Paired-seq☆15Jul 17, 2024Updated last year
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆14Oct 16, 2017Updated 8 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Dec 15, 2021Updated 4 years ago
- R package for Bioconductor submission☆38Dec 8, 2022Updated 3 years ago
- ☆15Jun 2, 2022Updated 3 years ago
- ☆19Mar 8, 2023Updated 2 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated 3 weeks ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆19Aug 9, 2023Updated 2 years ago
- ☆19Aug 29, 2025Updated 6 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆49Jan 12, 2024Updated 2 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- http://huttenhower.sph.harvard.edu/waafle☆23Feb 20, 2026Updated last week
- Analysis of (gut) microbiome in Qiime2 and R.☆23Aug 23, 2024Updated last year
- ☆23Jul 9, 2025Updated 7 months ago
- Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma☆21Aug 15, 2021Updated 4 years ago
- Architectural stripe detection from 3D genome conformation data☆18Sep 15, 2025Updated 5 months ago
- Cluster Identity Predictor (R package implementation)☆21Mar 8, 2022Updated 3 years ago
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆20Jul 19, 2022Updated 3 years ago
- Simple App to visualize single cell datasets☆20Apr 12, 2018Updated 7 years ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆100Nov 4, 2024Updated last year
- Query the gene models of a given organism/assembly☆27Oct 30, 2025Updated 4 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Collection of cell type reference datasets.☆64May 31, 2024Updated last year
- BulkSignalR☆27Jul 24, 2025Updated 7 months ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Jul 11, 2021Updated 4 years ago
- ☆26May 16, 2025Updated 9 months ago
- AlphaFind: Discover structure similarity across the entire known proteome☆24Nov 5, 2025Updated 3 months ago
- ☆31Apr 9, 2022Updated 3 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- ☆28Apr 5, 2025Updated 10 months ago
- Single cell epigenomic clustering based on accessibility pattern☆23Nov 9, 2022Updated 3 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Nov 10, 2021Updated 4 years ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆27Nov 7, 2025Updated 3 months ago
- ☆32Jun 12, 2023Updated 2 years ago
- Code and data repository for the 2020 physalia course on single cell RNA sequencing.☆59Apr 15, 2020Updated 5 years ago
- An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis☆27Jan 27, 2021Updated 5 years ago