Advanced steps of the OSCA book
☆16Aug 26, 2026Updated last week
Alternatives and similar repositories for OSCA.advanced
Users that are interested in OSCA.advanced are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- Architectural stripe detection from 3D genome conformation data☆19Sep 15, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Paired-seq☆15Jul 17, 2024Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆56Jan 12, 2024Updated 2 years ago
- ☆19Jul 28, 2026Updated last month
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 6 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated 3 months ago
- meta-analysis of new and published human WAT single cell data☆16Mar 12, 2025Updated last year
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆28May 16, 2025Updated last year
- Cluster Identity Predictor (R package implementation)☆22Aug 13, 2026Updated 2 weeks ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- ☆18Jun 2, 2022Updated 4 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 3 months ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆20Aug 9, 2023Updated 3 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆40Updated this week
- Single cell epigenomic clustering based on accessibility pattern☆24Nov 9, 2022Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jul 2, 2026Updated 2 months ago
- BulkSignalR☆28Jun 23, 2026Updated 2 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- ☆25Jul 9, 2025Updated last year
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data☆11Jul 25, 2022Updated 4 years ago
- Spatially-aware quality control for spatial transcriptomics☆17Oct 22, 2025Updated 10 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆49Feb 25, 2024Updated 2 years ago
- Simple App to visualize single cell datasets☆22Apr 12, 2018Updated 8 years ago
- Collection of cell type reference datasets.☆68May 31, 2024Updated 2 years ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- ☆19Aug 29, 2025Updated last year
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆22Jul 19, 2022Updated 4 years ago