Mayrlab / scUTRquantLinks
Bioinformatics pipeline for single-cell 3' UTR isoform quantification
☆26Updated 11 months ago
Alternatives and similar repositories for scUTRquant
Users that are interested in scUTRquant are comparing it to the libraries listed below
Sorting:
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- ☆43Updated 5 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- ☆32Updated 9 months ago
- ☆51Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- ☆24Updated 3 weeks ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- ☆59Updated last year
- ☆55Updated 4 years ago
- Clone identification from single-cell data☆61Updated 3 years ago
- ☆39Updated 2 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated 2 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 6 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- ☆22Updated 5 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- R package for analysing single cell data☆59Updated 2 years ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆82Updated 6 months ago
- Normalize CITEseq Data☆66Updated this week