Alternatives and similar repositories for scUTRquant

Users that are interested in scUTRquant are comparing it to the libraries listed below

• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago
• UPSUTER / GEMLI
  ☆32Updated 5 months ago
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆52Updated 4 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆45Updated last year
• lhe17 / nebula
  ☆41Updated last month
• gxiaolab / scAllele
  ☆34Updated last year
• wenweixiong / MARVEL
  ☆49Updated 11 months ago
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated 2 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆51Updated 2 years ago
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆50Updated last year
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆41Updated 2 years ago
• BMILAB / scAPAtrap
  ☆22Updated last year
• huangyh09 / brie
  BRIE: Bayesian Regression for Isoform Estimate in Single Cells
  ☆42Updated last year
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆43Updated 5 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆17Updated 3 months ago
• nghiavtr / SCmut
  ☆33Updated 6 years ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆50Updated 8 months ago
• lkmklsmn / MitoTrace
  ☆17Updated last year
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆43Updated 4 years ago
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆74Updated 2 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆39Updated 3 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆30Updated 2 years ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 8 months ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated last year
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆40Updated 2 weeks ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated last year