Mayrlab / scUTRquantLinks
Bioinformatics pipeline for single-cell 3' UTR isoform quantification
☆26Updated last year
Alternatives and similar repositories for scUTRquant
Users that are interested in scUTRquant are comparing it to the libraries listed below
Sorting:
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆32Updated 11 months ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- ☆52Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 8 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆45Updated 3 weeks ago
- scWGCNA☆61Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- ☆39Updated 3 months ago
- ☆18Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 3 weeks ago
- ☆59Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated this week
- ☆34Updated 6 years ago
- ☆25Updated 2 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 8 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆79Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆19Updated 6 months ago