Mayrlab / scUTRquantLinks
Bioinformatics pipeline for single-cell 3' UTR isoform quantification
☆26Updated last year
Alternatives and similar repositories for scUTRquant
Users that are interested in scUTRquant are comparing it to the libraries listed below
Sorting:
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆52Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ☆32Updated 10 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- scWGCNA☆61Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated 8 months ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- ☆39Updated 3 months ago
- ☆44Updated last week
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- ☆59Updated last year
- ☆55Updated 4 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated this week
- ☆34Updated 6 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 3 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆79Updated 7 months ago
- ☆25Updated last month
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆22Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago