Mayrlab / scUTRquantLinks
Bioinformatics pipeline for single-cell 3' UTR isoform quantification
☆26Updated last week
Alternatives and similar repositories for scUTRquant
Users that are interested in scUTRquant are comparing it to the libraries listed below
Sorting:
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆33Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆46Updated 3 years ago
- ☆53Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 2 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- ☆48Updated 2 months ago
- scWGCNA☆61Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- ☆40Updated 5 months ago
- ☆59Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Count HLA alleles in single-cell RNA-seq data☆63Updated 4 years ago
- ☆18Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆56Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆63Updated 2 months ago
- ☆34Updated 6 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Updated 2 years ago
- binned motif enrichment analysis and visualisation☆45Updated last week
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- scRNA-seq cell type identification☆44Updated 6 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Paired Insertion Counting for snATAC-seq data☆19Updated 8 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated 2 weeks ago
- Clone of the Bioconductor repository for the DropletUtils package.☆64Updated 5 months ago