Mayrlab / scUTRquant
Bioinformatics pipeline for single-cell 3' UTR isoform quantification
☆22Updated 5 months ago
Alternatives and similar repositories for scUTRquant:
Users that are interested in scUTRquant are comparing it to the libraries listed below
- ☆30Updated 3 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆49Updated 9 months ago
- ☆19Updated last year
- ☆33Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated last month
- Paired Insertion Counting for snATAC-seq data☆17Updated 8 months ago
- ☆29Updated 2 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- ☆41Updated last month
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 3 years ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- ☆12Updated 9 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- ☆16Updated 9 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- scWGCNA☆59Updated 2 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆19Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- An R package to analyze single-cell V(D)J data☆25Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year