KCCG / rageseqLinks
RAGE-seq scripts
☆18Updated 4 years ago
Alternatives and similar repositories for rageseq
Users that are interested in rageseq are comparing it to the libraries listed below
Sorting:
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- ☆51Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- ☆34Updated 6 years ago
- binned motif enrichment analysis and visualisation☆41Updated last month
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆23Updated 6 months ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- ☆38Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- chia pet analysis software☆25Updated 6 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 8 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- RNA editing tests☆17Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated last month
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- ☆17Updated last year
- ☆20Updated 5 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- Define regions in the genome☆32Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago