KCCG / rageseqLinks
RAGE-seq scripts
☆18Updated 4 years ago
Alternatives and similar repositories for rageseq
Users that are interested in rageseq are comparing it to the libraries listed below
Sorting:
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆31Updated 3 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- ☆34Updated 6 years ago
- ☆38Updated 5 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- ☆53Updated last year
- binned motif enrichment analysis and visualisation☆43Updated 2 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Toolkit for single-cell copy number analysis☆25Updated 2 weeks ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A continually expanding collection of RNA-seq tools☆53Updated 2 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- MutSig2CV from Lawrence et al. 2014☆33Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- ☆17Updated 6 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆56Updated 4 years ago