GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets. It is a product of the feedback from many model and dataset experts and our hope is that it allows for long-lasting benchmarking of models.
☆21Jul 12, 2026Updated last week
Alternatives and similar repositories for Genomic-API-for-Model-Evaluation
Users that are interested in Genomic-API-for-Model-Evaluation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Feb 6, 2023Updated 3 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆44Jul 3, 2025Updated last year
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated 10 months ago
- Biological sequence analysis for the modern age.☆304Updated this week
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Annotated sequence data☆11Feb 2, 2025Updated last year
- A context aware tool for proteasomal cleavage predictions☆16Updated this week
- FlashRNA - An Efficient Model for Regulatory Genomics☆18Oct 15, 2025Updated 9 months ago
- AlphaGenome PyTorch port☆150Updated this week
- ☆17May 22, 2025Updated last year
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆33Jun 3, 2026Updated last month
- RNA-seq prediction with deep convolutional neural networks.☆254Aug 28, 2025Updated 10 months ago
- Collection of mRNA benchmarks☆54Jun 9, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Sashimi plots for RNA-seq data using detected transcripts☆34Updated this week
- A Docker image for the CLIFF geolocation software.☆10Jun 12, 2018Updated 8 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- Tissue-specific variant effect predictions on splicing☆44May 23, 2023Updated 3 years ago
- Cherimoya is a lightweight sequence-to-function (S2F) model that is small, fast, and easy to use. Now usable by agents.☆38Updated this week
- Machine learning methods for DNA sequence analysis.☆64Updated this week
- Benchmarks for classification of genomic sequences☆179Aug 14, 2025Updated 11 months ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆62Jan 12, 2026Updated 6 months ago
- Plot ideogams and simple gene tracks with matplotlib☆25Jan 20, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Container class to represent genomic locations and support genomic analysis☆27Jul 13, 2026Updated last week
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- Visualization methods for omics dataset quality control☆10Jun 24, 2026Updated 3 weeks ago
- JanusDNA☆31Mar 19, 2026Updated 4 months ago
- CompBioBench: A benchmark of 100 diverse, verifiable questions for agents for computational biology (scripts for running agents)☆49Apr 6, 2026Updated 3 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Updated this week
- A collection of Jupyter notebooks.☆11Oct 31, 2017Updated 8 years ago
- Computational Optimization of DNA Activity (CODA)☆69Apr 3, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago
- Consensus peaks of chromatin accessibility in the human genome☆18Dec 1, 2025Updated 7 months ago
- Azure Functions for retrieving data from SharePoint Online, Dynamics 365, and Dynamics 365 Business Central with Entra ID app and Microso…☆15Mar 4, 2025Updated last year
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆130Jan 1, 2026Updated 6 months ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆33Jun 26, 2026Updated 3 weeks ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆13Jun 11, 2019Updated 7 years ago
- Code repository for the paper "Towards a Comprehensive Evaluation of Dimension Reduction Methods for Data Visualization"☆15Jul 4, 2024Updated 2 years ago