GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets. It is a product of the feedback from many model and dataset experts and our hope is that it allows for long-lasting benchmarking of models.
☆20May 6, 2026Updated last month
Alternatives and similar repositories for Genomic-API-for-Model-Evaluation
Users that are interested in Genomic-API-for-Model-Evaluation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Feb 6, 2023Updated 3 years ago
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated 9 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆44Jul 3, 2025Updated 11 months ago
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 5 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- RNA-seq prediction with deep convolutional neural networks.☆245Aug 28, 2025Updated 9 months ago
- Machine learning methods for DNA sequence analysis.☆64Feb 27, 2026Updated 3 months ago
- ☆16May 22, 2025Updated last year
- Biological sequence analysis for the modern age.☆287May 27, 2026Updated 2 weeks ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Nov 21, 2023Updated 2 years ago
- Software for linkage disequilibrium graphical models☆17Apr 6, 2025Updated last year
- A Docker image for the CLIFF geolocation software.☆10Jun 12, 2018Updated 7 years ago
- A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-…☆37Nov 25, 2024Updated last year
- ☆51Mar 22, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆52Sep 4, 2025Updated 9 months ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations☆62Updated this week
- Software for predicting translation initiation rates in bacteria☆33Jul 30, 2025Updated 10 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆33May 1, 2026Updated last month
- Consensus peaks of chromatin accessibility in the human genome☆18Dec 1, 2025Updated 6 months ago
- Benchmarks for classification of genomic sequences☆176Aug 14, 2025Updated 9 months ago
- Benchmark of GRNs using the GRETA pipeline☆33Mar 18, 2026Updated 2 months ago
- ☆10Jan 20, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tissue-specific variant effect predictions on splicing☆44May 23, 2023Updated 3 years ago
- pandasGWAS: a Python package for easy retrieval of GWAS Catalog data☆17Dec 19, 2025Updated 5 months ago
- ☆34Jan 27, 2025Updated last year
- Container class to represent genomic locations and support genomic analysis☆27Jun 1, 2026Updated last week
- Visualization methods for omics dataset quality control☆10May 26, 2026Updated 2 weeks ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Jun 1, 2026Updated last week
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 4 months ago
- Computational Optimization of DNA Activity (CODA)☆68Apr 3, 2025Updated last year
- Plot ideogams and simple gene tracks with matplotlib☆24Jan 20, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code repository for the paper "Towards a Comprehensive Evaluation of Dimension Reduction Methods for Data Visualization"☆14Jul 4, 2024Updated last year
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆130Jan 1, 2026Updated 5 months ago
- Azure Functions for retrieving data from SharePoint Online, Dynamics 365, and Dynamics 365 Business Central with Entra ID app and Microso…☆15Mar 4, 2025Updated last year
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 5 months ago
- Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.☆15Mar 3, 2023Updated 3 years ago
- ☆13Feb 16, 2019Updated 7 years ago
- ☆13Apr 23, 2025Updated last year