A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
☆55Jan 17, 2022Updated 4 years ago
Alternatives and similar repositories for scETM
Users that are interested in scETM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 5 years ago
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆14Oct 20, 2023Updated 2 years ago
- ☆31Aug 2, 2023Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Nov 11, 2019Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Mar 27, 2021Updated 4 years ago
- ALD study data analysis☆13Feb 16, 2023Updated 3 years ago
- single cell foundation model for Gene network inference and more☆20Nov 24, 2025Updated 4 months ago
- ☆18Oct 22, 2024Updated last year
- Discovering novel cell types across heterogenous single-cell experiments☆123Dec 8, 2022Updated 3 years ago
- Deep learning for single-cell transcript counts☆90Mar 14, 2025Updated last year
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- ☆29Apr 14, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Sequence data label generation and ingestion into deep learning models☆12Nov 17, 2021Updated 4 years ago
- Single Cell Generative Adversarial Network (scGAN)☆15May 29, 2020Updated 5 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Jan 9, 2026Updated 2 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆22May 16, 2025Updated 10 months ago
- Multi-resolution Variational Inference☆23Mar 16, 2026Updated last week
- A deep-learning framework for characterizing and visualizing tissue architecture from spatially resolved transcriptomics☆14Sep 13, 2022Updated 3 years ago
- ☆12Oct 10, 2024Updated last year
- 🏃 The go-to single-cell Foundation Model☆143Feb 20, 2026Updated last month
- ☆65Sep 13, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Single cell perturbation prediction☆337Dec 5, 2024Updated last year
- Comparison of single cell normalization strategies☆10Aug 13, 2021Updated 4 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Jul 23, 2020Updated 5 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆185Sep 7, 2023Updated 2 years ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Mar 13, 2022Updated 4 years ago
- ☆10Jun 29, 2021Updated 4 years ago
- ☆11Feb 1, 2023Updated 3 years ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆60Mar 16, 2026Updated last week
- ☆16Feb 25, 2017Updated 9 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Benchmark of GRNs using the GRETA pipeline☆31Mar 18, 2026Updated last week
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Mar 13, 2024Updated 2 years ago
- Aligned Diffusion Schroedinger Bridges (UAI 2023)☆13Sep 18, 2025Updated 6 months ago
- ☆43Jun 11, 2022Updated 3 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- ☆100Mar 24, 2023Updated 3 years ago
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago