daifengwanglab / JAMIE
Joint variational Autoencoders for Multimodal Imputation and Embedding (JAMIE)
☆28Updated last month
Alternatives and similar repositories for JAMIE:
Users that are interested in JAMIE are comparing it to the libraries listed below
- Python package implementing our method MatchCLOT for multimodal single-cell data integration☆13Updated last year
- MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions ba…☆15Updated last month
- Multi-stain graph self attention multiple instance learning for histopathology Whole Slide Images - BMVC 2023☆13Updated 2 months ago
- This is the official implementation of the method ContIG, for self-supervised learning from medical imaging with genomics☆52Updated 2 years ago
- Hyper-AdaC: Adaptive clustering-based hypergraph representation of whole slide images for survival analysis☆14Updated 2 years ago
- A Variational Information Bottleneck Approach to Multi-Omics Data Integration☆22Updated 3 years ago
- GenoTEX: A multi-task benchmark for LLM agentic methods in automated gene expression data analysis.☆19Updated 2 weeks ago
- Pytorch implementation for H2GT (ICME 2024)☆18Updated 5 months ago
- ☆15Updated 4 years ago
- ☆28Updated last year
- ☆40Updated 2 years ago
- Multimodal fusion for heterogeneous biomedical data. NeurIPS 2024.☆56Updated 4 months ago
- Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)☆18Updated 10 months ago
- Pancancer survival prediction using a deep learning architecture with multimodal representation and integration☆10Updated last year
- ☆42Updated 4 months ago
- ☆11Updated 2 years ago
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆30Updated last year
- ☆59Updated 2 months ago
- a unified single-cell data integration framework by optimal transport☆35Updated 6 months ago
- ☆69Updated 5 months ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆25Updated last week
- Joint variational Autoencoders for Multimodal Imputation and Embedding (JAMIE)☆12Updated last month
- ☆29Updated last year
- ☆17Updated 3 weeks ago
- Improving Representation Learning for Histopathologic Images with Cluster Constraints☆16Updated last year
- Code for the paper: Mixed Models with Multiple Instance Learning☆19Updated last week
- Multi-task deep learning framework for multi-omics data analysis☆45Updated 2 years ago
- Code to reproduce the multi-omics benchmark study☆8Updated 3 years ago
- Combining Graph Neural Network and Mamba to Capture Local and Global Tissue Spatial Relationships in Whole Slide Images☆23Updated 10 months ago
- ☆22Updated 6 months ago