daifengwanglab / JAMIELinks
Joint variational Autoencoders for Multimodal Imputation and Embedding (JAMIE)
☆30Updated 5 months ago
Alternatives and similar repositories for JAMIE
Users that are interested in JAMIE are comparing it to the libraries listed below
Sorting:
- ☆21Updated last month
- ☆44Updated last year
- Multi-task deep learning framework for multi-omics data analysis☆49Updated 3 years ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆46Updated 9 months ago
- Multi-stain graph self attention multiple instance learning for histopathology Whole Slide Images - BMVC 2023☆14Updated 11 months ago
- MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in…☆175Updated 4 years ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆83Updated last year
- DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images☆63Updated last week
- ☆71Updated 3 months ago
- Deep learning on histopathology images.☆140Updated 4 years ago
- A Variational Information Bottleneck Approach to Multi-Omics Data Integration☆24Updated 4 years ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆12Updated last year
- ☆51Updated last year
- ☆79Updated 8 months ago
- a unified single-cell data integration framework by optimal transport☆35Updated last year
- ☆53Updated 3 years ago
- ☆74Updated last year
- Identify spatial domain☆88Updated 8 months ago
- MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions ba…☆33Updated 5 months ago
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Updated 10 months ago
- A biologically interpretable graph neural network for multistain computational pathology - CVPR 2025☆26Updated 8 months ago
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆41Updated last year
- ☆16Updated 3 years ago
- Multimodal fusion for heterogeneous biomedical data. NeurIPS 2024.☆100Updated last year
- Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)☆19Updated last year
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆25Updated last year
- ☆33Updated last year
- Python package implementing our method MatchCLOT for multimodal single-cell data integration☆14Updated 2 years ago
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆30Updated 7 months ago
- Experimental evaluation and comparison of multi-omics data integration methods for cancer subtyping☆14Updated 4 years ago