scverse / anndata-tutorialsLinks
Use cases for anndata.
☆15Updated 2 weeks ago
Alternatives and similar repositories for anndata-tutorials
Users that are interested in anndata-tutorials are comparing it to the libraries listed below
Sorting:
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆14Updated 5 years ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- ☆22Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- ☆44Updated last week
- ☆35Updated 3 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- ☆10Updated 8 years ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- High-definition modeling of chromatin + transcriptomics data☆24Updated 2 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Dorothea package in Python☆11Updated 3 years ago
- Molecular interactions inference from single-cell multi-omics data☆25Updated 3 weeks ago
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆19Updated 2 years ago
- A python package for chromVAR☆28Updated 2 years ago
- .h5mu files interface for Seurat☆32Updated last year
- pseudobulking on an AnnData object☆32Updated 3 months ago
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆43Updated 7 months ago
- Code and documentation for the curation of cellxgene datasets☆46Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆32Updated 3 months ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 10 months ago
- Scripts for using scanpy☆36Updated 3 months ago
- Multimodal Data (.h5mu) implementation for Python☆99Updated last month