scverse / anndata-tutorialsLinks
Use cases for anndata.
☆14Updated 4 months ago
Alternatives and similar repositories for anndata-tutorials
Users that are interested in anndata-tutorials are comparing it to the libraries listed below
Sorting:
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆15Updated 5 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Code and documentation for the curation of cellxgene datasets☆50Updated last week
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- ☆22Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated last week
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Updated last year
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆30Updated last week
- Multimodal Data (.h5mu) implementation for Python☆98Updated 4 months ago
- MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)☆13Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆55Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆60Updated last year
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆12Updated last year
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- ☆45Updated last week
- ☆12Updated 2 years ago
- PROGENY Python implementation☆12Updated 3 years ago
- Multi-modal single cell analysis pipelines☆59Updated last week
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 6 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Python package to perform normalization and variance-stabilization of single-cell data☆25Updated 3 months ago
- spatial transcriptome, single cell☆70Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago