10XGenomics / longranger
10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling
☆31Updated 4 years ago
Alternatives and similar repositories for longranger:
Users that are interested in longranger are comparing it to the libraries listed below
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- ☆51Updated 5 years ago
- Long read to rMATS☆31Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆42Updated last year
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆30Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- ☆11Updated last year
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated this week
- ☆33Updated last year
- Digenome-toolkit ver2.☆16Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Evolutionary Transcriptomics with R☆42Updated 3 weeks ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- ☆21Updated 3 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Version II of Mandalorion☆32Updated 6 years ago