10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling
☆33Jul 31, 2020Updated 5 years ago
Alternatives and similar repositories for longranger
Users that are interested in longranger are comparing it to the libraries listed below
Sorting:
- ☆11Sep 22, 2025Updated 5 months ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 2 months ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Feb 2, 2022Updated 4 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- Open source tools and papers for structural variant analysis.☆12Feb 24, 2019Updated 7 years ago
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆15Jul 25, 2022Updated 3 years ago
- Dockerised and simplified version of SeqWare-CGP-SomaticCore☆14Mar 5, 2021Updated 4 years ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 4 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28May 9, 2024Updated last year
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- 10x Genomics Single Cell Analysis☆448Dec 10, 2025Updated 2 months ago
- SV detection tool for nanopore sequence reads☆97Jan 7, 2026Updated last month
- Taxa Insertion by Parsimony☆15Jan 22, 2025Updated last year
- ☆15Sep 26, 2019Updated 6 years ago
- ☆20Sep 6, 2024Updated last year
- Beautify the phylogenetic tree using one Excel sheet only☆16Mar 2, 2024Updated 2 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Feb 27, 2020Updated 6 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Jan 9, 2019Updated 7 years ago
- Naive de Bruijn graph implementation in python☆37Oct 2, 2017Updated 8 years ago
- Multi-label subcellular localization and sorting signal prediction based on protein foundation models☆22Jan 12, 2026Updated last month
- Code and simulations using biologically annotated neural networks☆23Aug 23, 2021Updated 4 years ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆115Nov 20, 2023Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 3 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Jan 19, 2023Updated 3 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- IBD based kinship estimation☆16Mar 3, 2023Updated 3 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Dec 6, 2018Updated 7 years ago
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated 11 months ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 7 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 4 years ago
- Methods to determine sequence element (unitig) presence/absence☆23Nov 24, 2025Updated 3 months ago
- ☆21Sep 22, 2022Updated 3 years ago
- Python tool for the analysis and visualization of mobile genetic elements☆20May 26, 2025Updated 9 months ago