10XGenomics / longranger
10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling
☆30Updated 4 years ago
Related projects: ⓘ
- A tool for the calculation of RNA-editing index for RNA seq data☆35Updated 7 months ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated 3 months ago
- ☆51Updated 5 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆36Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆27Updated 3 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆20Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆33Updated last month
- Long read to rMATS☆28Updated last year
- Structural variant merging tool☆44Updated 3 weeks ago
- TEspeX - pipeline for Transposable Elements expression quantification☆19Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆44Updated this week
- ☆10Updated last year
- heuristics to merge structural variant calls in VCF format.☆35Updated 7 years ago
- Master of Pores 2☆22Updated 10 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆38Updated 3 weeks ago
- Long-read splice alignment with high accuracy☆59Updated last week
- (WIP) best-practices workflow for rare disease☆58Updated 2 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Version II of Mandalorion☆32Updated 5 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆56Updated 3 months ago
- Human reference genome analysis sets☆46Updated last year
- ⛏ HLA predictions from NGS shotgun data☆51Updated 3 months ago
- Digenome-toolkit ver2.☆15Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆30Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆45Updated 3 years ago
- ☆21Updated 3 months ago