CASCI-lab / CANALinks
CANAlization: Control & Redundancy in Boolean Networks
☆24Updated 10 months ago
Alternatives and similar repositories for CANA
Users that are interested in CANA are comparing it to the libraries listed below
Sorting:
- Boolean Network Modeling☆40Updated 5 years ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆48Updated 7 months ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆13Updated last month
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆51Updated 6 years ago
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆25Updated 2 months ago
- Brief Python implementation of Most Permissive Boolean Networks☆19Updated 4 months ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- ☆23Updated last month
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated 3 weeks ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Methods for inferring undirected networks from data☆45Updated 4 years ago
- Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference☆14Updated 2 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- An extended package for clustering similarity☆66Updated 5 months ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- Git Repo for simulating Boolean Models☆35Updated last year
- Bicycle: Intervention-Based Causal Discovery with Cycles☆34Updated 3 weeks ago
- Piece-wise Linear curves converted to point-clouds, analysed with Persistent Homology, represented as HyperGraphs.☆16Updated 2 months ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated last week
- A library for network {reconstruction, distances, dynamics}☆170Updated 2 years ago
- ☆17Updated 6 months ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- A library to simulate single-cell data☆2Updated 2 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆35Updated 3 months ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆18Updated 6 years ago
- Python library for attractor identification and control in Boolean networks☆29Updated last year
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆7Updated 7 years ago
- HiDeF (Hierarchical community Decoding Framework)☆14Updated last year
- Target prioritization using network representation learning☆11Updated 3 years ago