CASCI-lab / CANALinks
CANAlization: Control & Redundancy in Boolean Networks
☆26Updated last month
Alternatives and similar repositories for CANA
Users that are interested in CANA are comparing it to the libraries listed below
Sorting:
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆52Updated last week
- Boolean Network Modeling☆40Updated 5 years ago
- A collection of 280+ Boolean networks from various sources useful for benchmarking or testing.☆18Updated this week
- Brief Python implementation of Most Permissive Boolean Networks☆21Updated last month
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last week
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated last month
- Python framework for Systems Biology modeling☆190Updated 5 months ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated this week
- Methods for inferring undirected networks from data☆46Updated 4 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆41Updated 4 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆61Updated 4 years ago
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆15Updated last month
- Tools for building and manipulating graphs in Python☆46Updated last month
- Git Repo for simulating Boolean Models☆36Updated 2 months ago
- Python Environment for Modeling and Simulating Biological Systems☆130Updated last month
- Systematically learn and evaluate manifolds from high-dimensional data☆104Updated 3 months ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆26Updated 9 months ago
- Bicycle: Intervention-Based Causal Discovery with Cycles☆36Updated 7 months ago
- Python utilities for SBML☆41Updated last week
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 3 months ago
- graph-tool - Efficient network analysis☆110Updated 2 years ago
- Rule-based modeling framework☆65Updated 7 months ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Updated 2 years ago
- Python port of the Unidip clustering algorithm from: http://www.kdd.org/kdd2016/subtopic/view/skinny-dip-clustering-in-a-sea-of-noise☆37Updated 2 years ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆33Updated 5 years ago
- ☆24Updated 8 months ago
- A simplified python interface to COPASI.☆25Updated this week