Alternatives and similar repositories for CANA

Users that are interested in CANA are comparing it to the libraries listed below

• hklarner / pyboolnet
  PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.
  ☆49Updated 8 months ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• sybila / biodivine-boolean-models
  A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.
  ☆13Updated last month
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆182Updated 4 months ago
• colomoto / colomoto-docker
  The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
  ☆27Updated last week
• CamaraLab / scTDA
  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
  ☆51Updated 7 years ago
• kylessmith / dynamicTreeCut
  Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
  ☆40Updated 3 years ago
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆100Updated 2 years ago
• IlyaLab / CombiningDependentPvaluesUsingEBM
  Python, R and Matlab implementation of Brown's Method to combine dependent P-values
  ☆25Updated 7 years ago
• BenjaminDoran / unidip
  Python port of the Unidip clustering algorithm from: http://www.kdd.org/kdd2016/subtopic/view/skinny-dip-clustering-in-a-sea-of-noise
  ☆36Updated last year
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated 2 years ago
• ialbert / booleannet
  Boolean Network Modeling
  ☆40Updated 5 years ago
• menchelab / CartoGRAPHs
  ☆23Updated 2 months ago
• netsiphd / netrd
  A library for network {reconstruction, distances, dynamics}
  ☆170Updated 2 years ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆35Updated last year
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆35Updated last week
• Hoosier-Clusters / clusim
  An extended package for clustering similarity
  ☆67Updated 6 months ago
• bnediction / mpbn
  Brief Python implementation of Most Permissive Boolean Networks
  ☆19Updated 5 months ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆39Updated 2 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated last year
• saezlab / networkcommons
  NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…
  ☆25Updated 2 months ago
• Tchanders / NetworkInference.jl
  Methods for inferring undirected networks from data
  ☆45Updated 4 years ago
• sorgerlab / indra
  INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and datab…
  ☆194Updated last week
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆119Updated last week
• netZoo / netZooPy
  netZooPy is a network biology package implemented in Python.
  ☆86Updated 2 weeks ago
• bnediction / bonesis
  Synthesis and Reprogramming of Most Permissive Boolean Networks
  ☆13Updated last week
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 2 months ago
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆54Updated last year
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆44Updated 2 weeks ago