CASCI-lab / CANALinks
CANAlization: Control & Redundancy in Boolean Networks
☆25Updated last year
Alternatives and similar repositories for CANA
Users that are interested in CANA are comparing it to the libraries listed below
Sorting:
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆49Updated 9 months ago
- Boolean Network Modeling☆40Updated 5 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated this week
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆13Updated last month
- Piece-wise Linear curves converted to point-clouds, analysed with Persistent Homology, represented as HyperGraphs.☆16Updated 5 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆101Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last week
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 3 years ago
- Methods for inferring undirected networks from data☆45Updated 4 years ago
- Python framework for Systems Biology modeling☆185Updated last month
- Brief Python implementation of Most Permissive Boolean Networks☆19Updated 7 months ago
- ☆24Updated 3 months ago
- Tools for building and manipulating graphs in Python☆42Updated last week
- Python Environment for Modeling and Simulating Biological Systems☆122Updated last month
- A library for network {reconstruction, distances, dynamics}☆170Updated 2 years ago
- HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs☆37Updated last year
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆32Updated 4 years ago
- Git Repo for simulating Boolean Models☆35Updated last year
- netZooPy is a network biology package implemented in Python.☆89Updated 2 months ago
- Bicycle: Intervention-Based Causal Discovery with Cycles☆35Updated 2 months ago
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆25Updated last month
- An extended package for clustering similarity☆68Updated 7 months ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last year
- Hypergraph Algorithms Package☆98Updated 2 years ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆19Updated last month
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆55Updated 2 years ago