Alternatives and similar repositories for CrossICC

Users that are interested in CrossICC are comparing it to the libraries listed below

• quevedor2 / aneuploidy_score
  R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…
  ☆16Updated 4 years ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆32Updated 3 years ago
• ShixiangWang / Variants2Neoantigen
  A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
  ☆29Updated 5 years ago
• Niinleslie / MesKit
  A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
  ☆36Updated 3 years ago
• miccec / yaGST
  ☆13Updated 7 years ago
• markowetzlab / CINSignatureQuantification
  Quantifying copy number signatures from absolute copy number profiles
  ☆24Updated last week
• gaospecial / ccgraph
  ☆11Updated 5 years ago
• ait5 / CNApp
  CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…
  ☆20Updated 5 years ago
• icbi-lab / Immunophenogram
  ☆40Updated 7 years ago
• jmzeng1314 / BPscRNAseq
  ☆10Updated 6 years ago
• jzsh2000 / seurat-shiny
  ☆19Updated last year
• CompEpigen / ezASCAT
  Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R
  ☆11Updated 3 years ago
• compgenomics / MeTDiff
  ☆14Updated 7 years ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated 2 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• TranslationalBioinformaticsUnit / GeneSetCluster
  a tool for summarizing and integrating gene-set analysis results
  ☆16Updated 10 months ago
• Changwuuu / Cuproptosis-pancancer
  ☆18Updated last year
• single-cell-genetics / limix_qtl
  ☆20Updated last year
• Core-Bioinformatics / bulkAnalyseR
  ☆28Updated last year
• Xiang-HF-Zhang / Dichotomous-of-innate-immune-landscape
  Dichotomous of innate immune landscape
  ☆17Updated 5 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆41Updated 3 months ago
• federicogiorgi / corto
  corto (Correlation Tool): an R package to generate correlation-based DPI networks
  ☆20Updated 2 years ago
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 6 years ago
• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆30Updated 5 years ago
• ShixiangWang / gcap
  GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…
  ☆19Updated 5 months ago
• guokai8 / richR
  Function Enrichment analysis and Network construction
  ☆12Updated last week
• Morriseylab / scExtras
  ☆13Updated 11 months ago
• jmzeng1314 / IDmap
  ☆11Updated 6 years ago
• ataudt / aneufinder
  Find CNVs in single cell sequencing data.
  ☆18Updated 2 years ago
• likelet / RscriptCollection
  Rscripts collection for ploting in daily research life
  ☆10Updated 4 years ago