bioinformatist / CrossICCLinks
An Interactive Consensus Clustering framework for Cross-platform data analysis
☆14Updated 3 years ago
Alternatives and similar repositories for CrossICC
Users that are interested in CrossICC are comparing it to the libraries listed below
Sorting:
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 4 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 3 years ago
- ☆41Updated 7 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- An R package to visualize bigwigs.☆31Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Network construction Algorithm☆22Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆13Updated 7 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Quantifying copy number signatures from absolute copy number profiles☆25Updated last month
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- ☆12Updated 6 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 5 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆28Updated last year
- ☆30Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Utility functions for FACETS☆39Updated last year
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 3 years ago
- ☆17Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- ☆11Updated 5 years ago
- ☆20Updated last month
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated 3 months ago