pdiakumis / rock
Rocking R at UMCCR
☆9Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for rock
- ☆13Updated 7 years ago
- An R package to time somatic mutations☆59Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆27Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆69Updated 5 months ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Enhanced version of the FastQTL QTL mapper☆56Updated last year
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- RNA editing tests☆16Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated 3 weeks ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆29Updated last year
- Main repository for Drews et al. (Nature, 2022)☆37Updated last year
- tools to find circRNAs in RNA-seq data☆40Updated 6 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Updated DANPOS2 to work with python3☆20Updated 8 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆50Updated 2 weeks ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- Utility functions for FACETS☆34Updated 7 months ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆28Updated 5 years ago
- QDNAseq bin annotation for hg38☆15Updated 2 years ago
- Tutorial Website☆53Updated 3 years ago
- ☆17Updated 5 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆94Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆26Updated 2 years ago
- ☆37Updated last year
- Detecting intron retention from RNA-Seq experiments☆53Updated 3 months ago
- ☆38Updated 3 years ago