pdiakumis / rockView external linksLinks
Rocking R at UMCCR
☆10Oct 11, 2020Updated 5 years ago
Alternatives and similar repositories for rock
Users that are interested in rock are comparing it to the libraries listed below
Sorting:
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆32Oct 29, 2025Updated 3 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 4 years ago
- ☆16Aug 14, 2024Updated last year
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 3 years ago
- ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data☆17Jul 13, 2020Updated 5 years ago
- R Deep Learning Projects, published by Packt☆22Jan 30, 2023Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20May 11, 2018Updated 7 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆20Apr 20, 2025Updated 9 months ago
- An R package to time somatic mutations☆65Dec 12, 2020Updated 5 years ago
- broom helpers for decision tree methods (rpart, randomForest, and more!)☆29Apr 30, 2025Updated 9 months ago
- E2E (Easy to Ensemble) is a novel R package designed to provide a comprehensive and flexible framework for ensemble machine learning, spe…☆22Dec 4, 2025Updated 2 months ago
- R Deep Learning Cookbook, published by Packt☆30Feb 5, 2026Updated last week
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Jul 15, 2025Updated 7 months ago
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆10Feb 10, 2024Updated 2 years ago
- Build SVG Custom User Interface in R, rmd, qmd and Shiny☆20Apr 10, 2025Updated 10 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆37Sep 16, 2025Updated 5 months ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆12Dec 4, 2023Updated 2 years ago
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer☆12Aug 9, 2024Updated last year
- Use batch balanced KNN (BBKNN) in R☆13Sep 9, 2025Updated 5 months ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 9 years ago
- ☆10Oct 24, 2024Updated last year
- Bioconductor R-package: Curated Prostate Cancer Data☆11Oct 1, 2024Updated last year
- Issue tracker for the Open Targets Platform☆13Jul 8, 2025Updated 7 months ago
- Simulate short-reads datasets using probabilistic models☆11Jun 1, 2013Updated 12 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- 🍱 R implementation for selected machine learning methods with deep learning frameworks (Keras, Tensorflow)☆46Mar 18, 2019Updated 6 years ago
- Interactive tool for Phosphoproteomics☆13May 6, 2020Updated 5 years ago
- ☆11Jul 31, 2019Updated 6 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆10May 31, 2024Updated last year
- ☆11Apr 26, 2021Updated 4 years ago
- ☆10Jan 25, 2019Updated 7 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆13Feb 23, 2023Updated 2 years ago
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆11Feb 7, 2023Updated 3 years ago
- A Chrome extension for edX and XueTangX to download subtitle file from its page☆13Jan 2, 2015Updated 11 years ago
- Shiny app for geno-pheno catalog☆11Nov 4, 2022Updated 3 years ago
- The EpiDiverse Bisulfite SNP-Calling and Methylation Clustering Pipeline, implemented with Nextflow☆12Jul 23, 2022Updated 3 years ago