raphael-group / spruceLinks
SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration
☆14Updated 7 years ago
Alternatives and similar repositories for spruce
Users that are interested in spruce are comparing it to the libraries listed below
Sorting:
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Updated 4 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 4 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- Universal RObust Peak Annotator☆16Updated 2 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- ☆40Updated 6 months ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Updated 7 years ago
- ☆12Updated 2 years ago
- ☆16Updated last year
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Updated 2 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year
- ☆22Updated 2 years ago
- A better, faster way to count guides in CRISPR screens.☆34Updated 9 months ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆37Updated last year
- Python package to analyze DNA methylation data☆44Updated last week
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 6 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- ☆22Updated 11 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago