broadinstitute / SignatureAnalyzer-GPULinks
GPU implementation of ARD NMF
☆44Updated 2 years ago
Alternatives and similar repositories for SignatureAnalyzer-GPU
Users that are interested in SignatureAnalyzer-GPU are comparing it to the libraries listed below
Sorting:
- Modelling DNA methylation profiles☆23Updated 5 years ago
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆35Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- ☆29Updated 2 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 4 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- ☆24Updated 7 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated this week
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- Fast motif matching in R☆46Updated last year
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 5 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆41Updated 9 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- scNMT-seq gastrulation☆42Updated 2 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆27Updated 7 years ago
- Automated marker-based annotation of cell types☆13Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- ☆41Updated 7 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- A framework to infer mutational signatures in cancer over time☆55Updated 6 years ago