broadinstitute / SignatureAnalyzer-GPULinks
GPU implementation of ARD NMF
☆43Updated 2 years ago
Alternatives and similar repositories for SignatureAnalyzer-GPU
Users that are interested in SignatureAnalyzer-GPU are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆34Updated 4 years ago
- Fast motif matching in R☆46Updated last year
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Single Cell RNA-seq UMI Filtering Facilitator☆9Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated this week
- Modelling DNA methylation profiles☆23Updated 5 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- Locus Overlap Analysis: Enrichment of Genomic Ranges☆78Updated 4 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- post-clustering differential expression test☆35Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- Automated marker-based annotation of cell types☆13Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago