maggiecrow / DEprior
☆15Updated 3 years ago
Related projects: ⓘ
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆43Updated last year
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆28Updated 5 years ago
- An r package that works as a wrapper to homologene☆40Updated 10 months ago
- An R Package for Geneset Enrichment Workflows☆75Updated 3 months ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated 9 months ago
- Identify and correct invalid gene symbols☆55Updated 4 months ago
- R package for benchmarking single cell analysis methods☆29Updated 11 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 3 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆18Updated last year
- Single-cell RNA Processing Software☆11Updated this week
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆45Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆38Updated 3 months ago
- ☆9Updated 4 months ago
- An R package to analyze single-cell V(D)J data☆24Updated 10 months ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆18Updated 2 months ago
- scDataviz: single cell dataviz and downstream analyses☆60Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆31Updated 2 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 2 months ago
- Differential Correlation across Ranked Samples☆12Updated last year
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 6 years ago
- Brings SingleCellExperiment objects to the tidyverse☆35Updated this week
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 3 years ago
- Integrating zingeR with ZINB-WaVE weights☆23Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- MASC: Mixed-effects Association testing for Single Cells☆15Updated 3 years ago